python-csb_1.2.3+dfsg-2_all.deb


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Description

python-csb - Python framework for structural bioinformatics

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-csb
Package version: 1.2.3+dfsg
Package release: 2
Package architecture: all
Package type: deb
Installed size: 8.15 KB
Download size: 2.07 MB
Official Mirror: archive.ubuntu.com
Computational Structural Biology Toolbox (CSB) is a Python class library for reading, storing and analyzing biomolecular structures in a variety of formats with rich support for statistical analyses. CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice.

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    Download

    Source package: python-csb

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-csb deb package:
      # sudo apt-get install python-csb

    Files

    • /usr/lib/python2.7/dist-packages/csb-1.2.3.egg-info
    • /usr/lib/python2.7/dist-packages/csb/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/build.py
    • /usr/lib/python2.7/dist-packages/csb/apps/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/apps/bfit.py
    • /usr/lib/python2.7/dist-packages/csb/apps/bfite.py
    • /usr/lib/python2.7/dist-packages/csb/apps/buildhmm.py
    • /usr/lib/python2.7/dist-packages/csb/apps/csfrag.py
    • /usr/lib/python2.7/dist-packages/csb/apps/embd.py
    • /usr/lib/python2.7/dist-packages/csb/apps/helloworld.py
    • /usr/lib/python2.7/dist-packages/csb/apps/hhfrag.py
    • /usr/lib/python2.7/dist-packages/csb/apps/hhsearch.py
    • /usr/lib/python2.7/dist-packages/csb/apps/precision.py
    • /usr/lib/python2.7/dist-packages/csb/apps/promix.py
    • /usr/lib/python2.7/dist-packages/csb/bio/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/fragments/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/fragments/rosetta.py
    • /usr/lib/python2.7/dist-packages/csb/bio/hmm/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/hmm/pseudocounts.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/clans.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/cs.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/dssp.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/fasta.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/hhpred.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/mrc.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/noe.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/procheck.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/psipred.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/svg.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/vasco.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/whatif.py
    • /usr/lib/python2.7/dist-packages/csb/bio/io/wwpdb.py
    • /usr/lib/python2.7/dist-packages/csb/bio/nmr/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/nmr/resources/AtomConnectivity.xml
    • /usr/lib/python2.7/dist-packages/csb/bio/nmr/resources/RandomCoil.Corrections.tsv
    • /usr/lib/python2.7/dist-packages/csb/bio/nmr/resources/RandomCoil.Reference.tsv
    • /usr/lib/python2.7/dist-packages/csb/bio/sequence/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/sequence/alignment.py
    • /usr/lib/python2.7/dist-packages/csb/bio/structure/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/bio/utils/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/core/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/io/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/io/plots.py
    • /usr/lib/python2.7/dist-packages/csb/io/tsv.py
    • /usr/lib/python2.7/dist-packages/csb/numeric/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/numeric/integrators.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/ars.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/maxent.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/mixtures.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/rand.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/scalemixture.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/pdf/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/pdf/parameterized.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/samplers/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/multichain.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/propagators.py
    • /usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/singlechain.py
    • /usr/lib/python2.7/dist-packages/csb/statmech/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/statmech/ensembles.py
    • /usr/lib/python2.7/dist-packages/csb/statmech/wham.py
    • /usr/lib/python2.7/dist-packages/csb/test/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/app.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/fragments/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/hmm/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/clans/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/cs/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/fasta/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/mrc/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/noe/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/procheck/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/whatif/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/nmr/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/structure/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/bio/utils/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/core/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/io/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/numeric/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/numeric/integrators.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/ars.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/maxent.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/mixtures.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/rand.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/scalemixture.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf/parameterized.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statistics/samplers/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statmech/__init__.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statmech/ensembles.py
    • /usr/lib/python2.7/dist-packages/csb/test/cases/statmech/wham.py
    • /usr/lib/python2.7/dist-packages/csb/test/data/1C3W_10.mrc
    • /usr/lib/python2.7/dist-packages/csb/test/data/1d3z.legacy.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/1d3z.regular.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/1nz9.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/1nz9A.frags
    • /usr/lib/python2.7/dist-packages/csb/test/data/2JZC.sum
    • /usr/lib/python2.7/dist-packages/csb/test/data/2l01.v2.str
    • /usr/lib/python2.7/dist-packages/csb/test/data/2l01.v3.str
    • /usr/lib/python2.7/dist-packages/csb/test/data/3p1u.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/3shm_ca.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/ISL5.1.isl
    • /usr/lib/python2.7/dist-packages/csb/test/data/Sparky.peaks
    • /usr/lib/python2.7/dist-packages/csb/test/data/Xeasy1.peaks
    • /usr/lib/python2.7/dist-packages/csb/test/data/Xeasy2.peaks
    • /usr/lib/python2.7/dist-packages/csb/test/data/ake-xray-ensemble-ca.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/csb.tsv
    • /usr/lib/python2.7/dist-packages/csb/test/data/d1b24a2.hhm
    • /usr/lib/python2.7/dist-packages/csb/test/data/d1ea0a1.hhr
    • /usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.a3m
    • /usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.hhm
    • /usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.mfasta
    • /usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/mapping.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/mapping2.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/mapping3.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/modified.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/modified2.pdb
    • /usr/lib/python2.7/dist-packages/csb/test/data/out.clans
    • /usr/lib/python2.7/dist-packages/csb/test/data/pdbout.txt
    • /usr/lib/python2.7/dist-packages/csb/test/data/standard.tsv
    • /usr/lib/python2.7/dist-packages/csb/test/data/struct.ali.mfasta
    • /usr/lib/python2.7/dist-packages/csb/test/data/test.fa
    • /usr/lib/python2.7/dist-packages/csb/test/data/test.hhm
    • /usr/lib/python2.7/dist-packages/csb/test/data/test2.hhm
    • /usr/share/doc/python-csb/changelog.Debian.gz
    • /usr/share/doc/python-csb/copyright

    Changelog

    2015-12-28 - Andreas Tille <tille@debian.org> python-csb (1.2.3+dfsg-2) unstable; urgency=medium * Fix d/watch * Fix clean target * use pybuild * Add missing Build-Depends for Python3 * Verified tests and excluded online tests (even if these do not cause failures) Closes: #738962

    2014-10-02 - Andreas Tille <tille@debian.org> python-csb (1.2.3+dfsg-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control

    2014-02-03 - Tomas Di Domenico <tdido@tdido.com.ar> python-csb (1.2.2+dfsg-2) unstable; urgency=medium * debian/tests/build: add build dir to PYTHONPATH to fix auto_test permission problems Closes: #735883

    2013-12-29 - Tomas Di Domenico <tdido@tdido.com.ar> python-csb (1.2.2+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * debian/watch: Enable detecting also *.zip source archives * debian/rules: - delete useless .PHONY lines * debian/copyright: Add Upstream-Contact and more authors addresses [ Tomas Di Domenico ] * debian/rules: add build dir to PYTHONPATH to fix auto_test Closes: #732945

    2013-12-22 - Andreas Tille <tille@debian.org> python-csb (1.2.1+dfsg-2) unstable; urgency=medium * debian/control - cme fix dpkg-control - debhelper 9 * debian/tests/control: Add python-numpy Closes: #711376

    2013-10-09 - Tomas Di Domenico <tdido@tdido.com.ar> python-csb (1.2.1+dfsg-1) unstable; urgency=low * Updated to the latest upstream release

    2013-07-05 - gregor herrmann <gregoa@debian.org> python-csb (1.1.1+dfsg-1.1) unstable; urgency=low * Non-maintainer upload. [ Tomas Di Domenico ] * Removing gbp.conf since it complicates things with git-buildpackage [ gregor herrmann ] * debian/rules: set HOME for epydoc to a directory under debian/. (Closes: #711423)

    2012-11-12 - Tomas Di Domenico <tdido@tdido.com.ar> python-csb (1.1.1+dfsg-1) unstable; urgency=low * Initial release (Closes: #692032)

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