python-cogent_1.5.3-10_amd64.deb


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Description

python-cogent - framework for genomic biology

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-cogent
Package version 1.5.3
Package release 10
Package architecture amd64
Package type deb
Installed size 4.80 KB
Download size 917.63 KB
Official Mirror archive.ubuntu.com
PyCogent is a software library for genomic biology. It is a fully
integrated and thoroughly tested framework for:
* controlling third-party applications,
* devising workflows; querying databases,
* conducting novel probabilistic analyses of biological sequence
evolution, and
* generating publication quality graphics.
It is distinguished by many unique built-in capabilities (such as true codon
alignment) and the frequent addition of entirely new methods for the analysis
of genomic data.

Alternatives

Package Version Architecture Repository
python-cogent_1.5.3-10_i386.deb 1.5.3 i386 Ubuntu Universe
python-cogent - - -

Requires

Name Value
libc6 >= 2.4
python << 2.8
python >= 2.7~
python-numpy >= 1:1.8.0
python-numpy-abi9 -
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-cogent_1.5.3-10_amd64.deb
Source Package python-cogent

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-cogent deb package:
    # sudo apt-get install python-cogent

Files

Path
/usr/lib/python2.7/dist-packages/cogent-1.5.3.egg-info
/usr/lib/python2.7/dist-packages/cogent/__init__.py
/usr/lib/python2.7/dist-packages/cogent/align/__init__.py
/usr/lib/python2.7/dist-packages/cogent/align/_compare.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_pogs.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py
/usr/lib/python2.7/dist-packages/cogent/align/align.py
/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py
/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py
/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py
/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py
/usr/lib/python2.7/dist-packages/cogent/align/progressive.py
/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py
/usr/lib/python2.7/dist-packages/cogent/align/traceback.py
/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py
/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py
/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py
/usr/lib/python2.7/dist-packages/cogent/app/__init__.py
/usr/lib/python2.7/dist-packages/cogent/app/blast.py
/usr/lib/python2.7/dist-packages/cogent/app/blat.py
/usr/lib/python2.7/dist-packages/cogent/app/bwa.py
/usr/lib/python2.7/dist-packages/cogent/app/carnac.py
/usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py
/usr/lib/python2.7/dist-packages/cogent/app/clearcut.py
/usr/lib/python2.7/dist-packages/cogent/app/clustalw.py
/usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py
/usr/lib/python2.7/dist-packages/cogent/app/comrna.py
/usr/lib/python2.7/dist-packages/cogent/app/consan.py
/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py
/usr/lib/python2.7/dist-packages/cogent/app/cove.py
/usr/lib/python2.7/dist-packages/cogent/app/dialign.py
/usr/lib/python2.7/dist-packages/cogent/app/dotur.py
/usr/lib/python2.7/dist-packages/cogent/app/dynalign.py
/usr/lib/python2.7/dist-packages/cogent/app/fasttree.py
/usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py
/usr/lib/python2.7/dist-packages/cogent/app/foldalign.py
/usr/lib/python2.7/dist-packages/cogent/app/formatdb.py
/usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py
/usr/lib/python2.7/dist-packages/cogent/app/guppy.py
/usr/lib/python2.7/dist-packages/cogent/app/ilm.py
/usr/lib/python2.7/dist-packages/cogent/app/infernal.py
/usr/lib/python2.7/dist-packages/cogent/app/knetfold.py
/usr/lib/python2.7/dist-packages/cogent/app/mafft.py
/usr/lib/python2.7/dist-packages/cogent/app/mfold.py
/usr/lib/python2.7/dist-packages/cogent/app/mothur.py
/usr/lib/python2.7/dist-packages/cogent/app/msms.py
/usr/lib/python2.7/dist-packages/cogent/app/muscle.py
/usr/lib/python2.7/dist-packages/cogent/app/muscle_v38.py
/usr/lib/python2.7/dist-packages/cogent/app/nupack.py
/usr/lib/python2.7/dist-packages/cogent/app/parameters.py
/usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py
/usr/lib/python2.7/dist-packages/cogent/app/pfold.py
/usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py
/usr/lib/python2.7/dist-packages/cogent/app/pplacer.py
/usr/lib/python2.7/dist-packages/cogent/app/raxml.py
/usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py
/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py
/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py
/usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py
/usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py
/usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py
/usr/lib/python2.7/dist-packages/cogent/app/rnaview.py
/usr/lib/python2.7/dist-packages/cogent/app/rtax.py
/usr/lib/python2.7/dist-packages/cogent/app/sfffile.py
/usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py
/usr/lib/python2.7/dist-packages/cogent/app/sfold.py
/usr/lib/python2.7/dist-packages/cogent/app/stride.py
/usr/lib/python2.7/dist-packages/cogent/app/uclust.py
/usr/lib/python2.7/dist-packages/cogent/app/unafold.py
/usr/lib/python2.7/dist-packages/cogent/app/usearch.py
/usr/lib/python2.7/dist-packages/cogent/app/util.py
/usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py
/usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py
/usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py
/usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py
/usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py
/usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py
/usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py
/usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py
/usr/lib/python2.7/dist-packages/cogent/core/__init__.py
/usr/lib/python2.7/dist-packages/cogent/core/alignment.py
/usr/lib/python2.7/dist-packages/cogent/core/alphabet.py
/usr/lib/python2.7/dist-packages/cogent/core/annotation.py
/usr/lib/python2.7/dist-packages/cogent/core/bitvector.py
/usr/lib/python2.7/dist-packages/cogent/core/entity.py
/usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py
/usr/lib/python2.7/dist-packages/cogent/core/info.py
/usr/lib/python2.7/dist-packages/cogent/core/location.py
/usr/lib/python2.7/dist-packages/cogent/core/moltype.py
/usr/lib/python2.7/dist-packages/cogent/core/profile.py
/usr/lib/python2.7/dist-packages/cogent/core/sequence.py
/usr/lib/python2.7/dist-packages/cogent/core/tree.py
/usr/lib/python2.7/dist-packages/cogent/core/usage.py
/usr/lib/python2.7/dist-packages/cogent/data/__init__.py
/usr/lib/python2.7/dist-packages/cogent/data/energy_params.py
/usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py
/usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py
/usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py
/usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py
/usr/lib/python2.7/dist-packages/cogent/db/__init__.py
/usr/lib/python2.7/dist-packages/cogent/db/ncbi.py
/usr/lib/python2.7/dist-packages/cogent/db/pdb.py
/usr/lib/python2.7/dist-packages/cogent/db/rfam.py
/usr/lib/python2.7/dist-packages/cogent/db/util.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py
/usr/lib/python2.7/dist-packages/cogent/draw/__init__.py
/usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py
/usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py
/usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py
/usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py
/usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py
/usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py
/usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py
/usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py
/usr/lib/python2.7/dist-packages/cogent/draw/legend.py
/usr/lib/python2.7/dist-packages/cogent/draw/linear.py
/usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py
/usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py
/usr/lib/python2.7/dist-packages/cogent/draw/util.py
/usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py
/usr/lib/python2.7/dist-packages/cogent/evolve/_likelihood_tree.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/evolve/_pairwise_distance.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/evolve/_solved_models.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py
/usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py
/usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py
/usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py
/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py
/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py
/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py
/usr/lib/python2.7/dist-packages/cogent/evolve/models.py
/usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py
/usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py
/usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py
/usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py
/usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py
/usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py
/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py
/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py
/usr/lib/python2.7/dist-packages/cogent/format/__init__.py
/usr/lib/python2.7/dist-packages/cogent/format/alignment.py
/usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py
/usr/lib/python2.7/dist-packages/cogent/format/clustal.py
/usr/lib/python2.7/dist-packages/cogent/format/fasta.py
/usr/lib/python2.7/dist-packages/cogent/format/mage.py
/usr/lib/python2.7/dist-packages/cogent/format/motif.py
/usr/lib/python2.7/dist-packages/cogent/format/nexus.py
/usr/lib/python2.7/dist-packages/cogent/format/pdb.py
/usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py
/usr/lib/python2.7/dist-packages/cogent/format/phylip.py
/usr/lib/python2.7/dist-packages/cogent/format/rna_struct.py
/usr/lib/python2.7/dist-packages/cogent/format/stockholm.py
/usr/lib/python2.7/dist-packages/cogent/format/structure.py
/usr/lib/python2.7/dist-packages/cogent/format/table.py
/usr/lib/python2.7/dist-packages/cogent/format/text_tree.py
/usr/lib/python2.7/dist-packages/cogent/format/xyzrn.py
/usr/lib/python2.7/dist-packages/cogent/maths/__init__.py
/usr/lib/python2.7/dist-packages/cogent/maths/_period.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/maths/distance_transform.py
/usr/lib/python2.7/dist-packages/cogent/maths/fit_function.py
/usr/lib/python2.7/dist-packages/cogent/maths/function_optimisation.py
/usr/lib/python2.7/dist-packages/cogent/maths/geometry.py
/usr/lib/python2.7/dist-packages/cogent/maths/markov.py
/usr/lib/python2.7/dist-packages/cogent/maths/matrix_exponentiation.py
/usr/lib/python2.7/dist-packages/cogent/maths/matrix_logarithm.py
/usr/lib/python2.7/dist-packages/cogent/maths/optimisers.py
/usr/lib/python2.7/dist-packages/cogent/maths/period.py
/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimisers.py
/usr/lib/python2.7/dist-packages/cogent/maths/scipy_optimize.py
/usr/lib/python2.7/dist-packages/cogent/maths/simannealingoptimiser.py
/usr/lib/python2.7/dist-packages/cogent/maths/solve.py
/usr/lib/python2.7/dist-packages/cogent/maths/svd.py
/usr/lib/python2.7/dist-packages/cogent/maths/matrix/__init__.py
/usr/lib/python2.7/dist-packages/cogent/maths/matrix/distance.py
/usr/lib/python2.7/dist-packages/cogent/maths/spatial/__init__.py
/usr/lib/python2.7/dist-packages/cogent/maths/spatial/ckd3.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/maths/stats/__init__.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/alpha_diversity.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/distribution.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/histogram.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/information_criteria.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/jackknife.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/kendall.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/ks.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/period.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/rarefaction.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/special.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/test.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/util.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/__init__.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/adaptor.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/get_by_cai.py
/usr/lib/python2.7/dist-packages/cogent/maths/stats/cai/util.py
/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/__init__.py
/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_tree.py
/usr/lib/python2.7/dist-packages/cogent/maths/unifrac/fast_unifrac.py
/usr/lib/python2.7/dist-packages/cogent/motif/__init__.py
/usr/lib/python2.7/dist-packages/cogent/motif/k_word.py
/usr/lib/python2.7/dist-packages/cogent/motif/util.py
/usr/lib/python2.7/dist-packages/cogent/parse/__init__.py
/usr/lib/python2.7/dist-packages/cogent/parse/aaindex.py
/usr/lib/python2.7/dist-packages/cogent/parse/agilent_microarray.py
/usr/lib/python2.7/dist-packages/cogent/parse/binary_sff.py
/usr/lib/python2.7/dist-packages/cogent/parse/blast.py
/usr/lib/python2.7/dist-packages/cogent/parse/blast_xml.py
/usr/lib/python2.7/dist-packages/cogent/parse/bowtie.py
/usr/lib/python2.7/dist-packages/cogent/parse/bpseq.py
/usr/lib/python2.7/dist-packages/cogent/parse/carnac.py
/usr/lib/python2.7/dist-packages/cogent/parse/cigar.py
/usr/lib/python2.7/dist-packages/cogent/parse/clustal.py
/usr/lib/python2.7/dist-packages/cogent/parse/cmfinder.py
/usr/lib/python2.7/dist-packages/cogent/parse/column.py
/usr/lib/python2.7/dist-packages/cogent/parse/comrna.py
/usr/lib/python2.7/dist-packages/cogent/parse/consan.py
/usr/lib/python2.7/dist-packages/cogent/parse/contrafold.py
/usr/lib/python2.7/dist-packages/cogent/parse/cove.py
/usr/lib/python2.7/dist-packages/cogent/parse/ct.py
/usr/lib/python2.7/dist-packages/cogent/parse/cut.py
/usr/lib/python2.7/dist-packages/cogent/parse/cutg.py
/usr/lib/python2.7/dist-packages/cogent/parse/dialign.py
/usr/lib/python2.7/dist-packages/cogent/parse/dotur.py
/usr/lib/python2.7/dist-packages/cogent/parse/dynalign.py
/usr/lib/python2.7/dist-packages/cogent/parse/ebi.py
/usr/lib/python2.7/dist-packages/cogent/parse/fasta.py
/usr/lib/python2.7/dist-packages/cogent/parse/fastq.py
/usr/lib/python2.7/dist-packages/cogent/parse/flowgram.py
/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_collection.py
/usr/lib/python2.7/dist-packages/cogent/parse/flowgram_parser.py
/usr/lib/python2.7/dist-packages/cogent/parse/foldalign.py
/usr/lib/python2.7/dist-packages/cogent/parse/gbseq.py
/usr/lib/python2.7/dist-packages/cogent/parse/gcg.py
/usr/lib/python2.7/dist-packages/cogent/parse/genbank.py
/usr/lib/python2.7/dist-packages/cogent/parse/gff.py
/usr/lib/python2.7/dist-packages/cogent/parse/gibbs.py
/usr/lib/python2.7/dist-packages/cogent/parse/greengenes.py
/usr/lib/python2.7/dist-packages/cogent/parse/illumina_sequence.py
/usr/lib/python2.7/dist-packages/cogent/parse/ilm.py
/usr/lib/python2.7/dist-packages/cogent/parse/infernal.py
/usr/lib/python2.7/dist-packages/cogent/parse/kegg_fasta.py
/usr/lib/python2.7/dist-packages/cogent/parse/kegg_ko.py
/usr/lib/python2.7/dist-packages/cogent/parse/kegg_pos.py
/usr/lib/python2.7/dist-packages/cogent/parse/kegg_taxonomy.py
/usr/lib/python2.7/dist-packages/cogent/parse/knetfold.py
/usr/lib/python2.7/dist-packages/cogent/parse/locuslink.py
/usr/lib/python2.7/dist-packages/cogent/parse/macsim.py
/usr/lib/python2.7/dist-packages/cogent/parse/mage.py
/usr/lib/python2.7/dist-packages/cogent/parse/meme.py
/usr/lib/python2.7/dist-packages/cogent/parse/mfold.py
/usr/lib/python2.7/dist-packages/cogent/parse/mothur.py
/usr/lib/python2.7/dist-packages/cogent/parse/msms.py
/usr/lib/python2.7/dist-packages/cogent/parse/ncbi_taxonomy.py
/usr/lib/python2.7/dist-packages/cogent/parse/newick.py
/usr/lib/python2.7/dist-packages/cogent/parse/nexus.py
/usr/lib/python2.7/dist-packages/cogent/parse/nupack.py
/usr/lib/python2.7/dist-packages/cogent/parse/paml.py
/usr/lib/python2.7/dist-packages/cogent/parse/paml_matrix.py
/usr/lib/python2.7/dist-packages/cogent/parse/pdb.py
/usr/lib/python2.7/dist-packages/cogent/parse/pfold.py
/usr/lib/python2.7/dist-packages/cogent/parse/phylip.py
/usr/lib/python2.7/dist-packages/cogent/parse/pknotsrg.py
/usr/lib/python2.7/dist-packages/cogent/parse/psl.py
/usr/lib/python2.7/dist-packages/cogent/parse/rdb.py
/usr/lib/python2.7/dist-packages/cogent/parse/record.py
/usr/lib/python2.7/dist-packages/cogent/parse/record_finder.py
/usr/lib/python2.7/dist-packages/cogent/parse/rfam.py
/usr/lib/python2.7/dist-packages/cogent/parse/rna_fold.py
/usr/lib/python2.7/dist-packages/cogent/parse/rna_plot.py
/usr/lib/python2.7/dist-packages/cogent/parse/rnaalifold.py
/usr/lib/python2.7/dist-packages/cogent/parse/rnaforester.py
/usr/lib/python2.7/dist-packages/cogent/parse/rnashapes.py
/usr/lib/python2.7/dist-packages/cogent/parse/rnaview.py
/usr/lib/python2.7/dist-packages/cogent/parse/sequence.py
/usr/lib/python2.7/dist-packages/cogent/parse/sfold.py
/usr/lib/python2.7/dist-packages/cogent/parse/sprinzl.py
/usr/lib/python2.7/dist-packages/cogent/parse/stockholm.py
/usr/lib/python2.7/dist-packages/cogent/parse/stride.py
/usr/lib/python2.7/dist-packages/cogent/parse/structure.py
/usr/lib/python2.7/dist-packages/cogent/parse/table.py
/usr/lib/python2.7/dist-packages/cogent/parse/tinyseq.py
/usr/lib/python2.7/dist-packages/cogent/parse/tree.py
/usr/lib/python2.7/dist-packages/cogent/parse/tree_xml.py
/usr/lib/python2.7/dist-packages/cogent/parse/unafold.py
/usr/lib/python2.7/dist-packages/cogent/parse/unigene.py
/usr/lib/python2.7/dist-packages/cogent/phylo/__init__.py
/usr/lib/python2.7/dist-packages/cogent/phylo/consensus.py
/usr/lib/python2.7/dist-packages/cogent/phylo/distance.py
/usr/lib/python2.7/dist-packages/cogent/phylo/least_squares.py
/usr/lib/python2.7/dist-packages/cogent/phylo/maximum_likelihood.py
/usr/lib/python2.7/dist-packages/cogent/phylo/nj.py
/usr/lib/python2.7/dist-packages/cogent/phylo/tree_collection.py
/usr/lib/python2.7/dist-packages/cogent/phylo/tree_space.py
/usr/lib/python2.7/dist-packages/cogent/phylo/util.py
/usr/lib/python2.7/dist-packages/cogent/recalculation/__init__.py
/usr/lib/python2.7/dist-packages/cogent/recalculation/calculation.py
/usr/lib/python2.7/dist-packages/cogent/recalculation/definition.py
/usr/lib/python2.7/dist-packages/cogent/recalculation/scope.py
/usr/lib/python2.7/dist-packages/cogent/recalculation/setting.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/__init__.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/analysis.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/birth_death.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/markov.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/microarray_normalize.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/randomization.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/searchpath.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/sequence_generators.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/tree.py
/usr/lib/python2.7/dist-packages/cogent/seqsim/usage.py
/usr/lib/python2.7/dist-packages/cogent/struct/__init__.py
/usr/lib/python2.7/dist-packages/cogent/struct/_asa.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/struct/_contact.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cogent/struct/annotation.py
/usr/lib/python2.7/dist-packages/cogent/struct/asa.py
/usr/lib/python2.7/dist-packages/cogent/struct/contact.py
/usr/lib/python2.7/dist-packages/cogent/struct/dihedral.py
/usr/lib/python2.7/dist-packages/cogent/struct/knots.py
/usr/lib/python2.7/dist-packages/cogent/struct/manipulation.py
/usr/lib/python2.7/dist-packages/cogent/struct/pairs_util.py
/usr/lib/python2.7/dist-packages/cogent/struct/rna2d.py
/usr/lib/python2.7/dist-packages/cogent/struct/selection.py
/usr/lib/python2.7/dist-packages/cogent/util/__init__.py
/usr/lib/python2.7/dist-packages/cogent/util/array.py
/usr/lib/python2.7/dist-packages/cogent/util/checkpointing.py
/usr/lib/python2.7/dist-packages/cogent/util/datatypes.py
/usr/lib/python2.7/dist-packages/cogent/util/dict2d.py
/usr/lib/python2.7/dist-packages/cogent/util/dict_array.py
/usr/lib/python2.7/dist-packages/cogent/util/misc.py
/usr/lib/python2.7/dist-packages/cogent/util/modules.py
/usr/lib/python2.7/dist-packages/cogent/util/option_parsing.py
/usr/lib/python2.7/dist-packages/cogent/util/organizer.py
/usr/lib/python2.7/dist-packages/cogent/util/parallel.py
/usr/lib/python2.7/dist-packages/cogent/util/progress_display.py
/usr/lib/python2.7/dist-packages/cogent/util/recode_alignment.py
/usr/lib/python2.7/dist-packages/cogent/util/table.py
/usr/lib/python2.7/dist-packages/cogent/util/terminal.py
/usr/lib/python2.7/dist-packages/cogent/util/transform.py
/usr/lib/python2.7/dist-packages/cogent/util/trie.py
/usr/lib/python2.7/dist-packages/cogent/util/unit_test.py
/usr/lib/python2.7/dist-packages/cogent/util/update_version.py
/usr/lib/python2.7/dist-packages/cogent/util/warning.py
/usr/share/doc/python-cogent/README.Debian
/usr/share/doc/python-cogent/changelog.Debian.gz
/usr/share/doc/python-cogent/copyright

Changelog

2015-12-30 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-10) unstable; urgency=medium
* mothur does not exist on s390x
* exclude test failed on i386 also on kfreebsd-i386
2015-12-26 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-9) unstable; urgency=medium
* Different autobuilder seems to fail on different tests - exclude another
two tests on i386
2015-12-25 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-8) unstable; urgency=medium
* Ignore some more test issues only on ppc64
2015-12-24 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-7) unstable; urgency=medium
* Ignore a few test failures on certain architectures to at least
document the problem debian/README.source was created
2015-12-23 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-6) unstable; urgency=medium
* Also deal with raxml that only exists on [any-amd64 any-i386]
2015-12-23 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-5) unstable; urgency=medium
* Also deal with infernal that only exists on [any-amd64 any-i386]
2015-12-23 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-4) unstable; urgency=medium
* Build-Depends: bwa [any-amd64] and exclude bwa tests for other
architectures
Closes: #808799
* Really activate tests but only those that are known to pass.  All
failed tests excluded for the moment - more detailed investigation
is needed
* Drop debug package in favour of automatically generated one
* Add hint about tests to README.Debian.
2015-05-21 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-3) unstable; urgency=medium
* cme fix dpkg-control
* Priority: optional (except for *-dbg)
* DEP5
* debian/watch: Adapted to Github
* DEP3
* README.source removed since redundant
* cme fix dpkg-control
* Adapt to the naming scheme of cd-hit inside Debian
Closes: #730515
* Switch from python-support to pybuild
Closes: #786073
2014-04-25 - Tim Booth <tbooth@ceh.ac.uk>
python-cogent (1.5.3-2biolinux1) trusty; urgency=low
* Allow use of newer cd-hit that doesn't leave a tmp file
Note - the tests still fail as output is different, but
this is a quick fix.
* Also make the script compatible with our parsinsert package
* Add suggests dep on both of these
* Rebuild for Trusty
2013-05-30 - Andreas Tille <tille@debian.org>
python-cogent (1.5.3-2) unstable; urgency=low
* debian/rules: Add -f option to rm statements to not fail if
files to be remove do not exist
Closes: #710339

See Also

Package Description
python-colander_1.0b1-3_all.deb simple schema-based serialization and deserialization - Python 2.x
python-collada_0.4-2_all.deb Python module for creating, editing and loading COLLADA
python-colorama_0.3.7-1_all.deb Cross-platform colored terminal text in Python - Python 2.x
python-colorlog_2.6.0-1_all.deb formatter to use with the logging module of Python 2
python-comedilib_0.10.2-4_amd64.deb Python wrapper for Comedilib
python-commandnotfound_0.3ubuntu16.04_all.deb Python 2 bindings for command-not-found
python-commando_0.3.4-1.1_all.deb wrapper for argparse to define declaratively
python-compizconfig_0.9.12.2+16.04.20160415-0ubuntu1_amd64.deb Compizconfig bindings for Python
python-confargparse_1.1.20-2build1_amd64.deb argument/configuration file parser with the syntax of argparser (Python 2)
python-configargparse_0.10.0-2_all.deb replacement for argparse with config files and environment variables (Python 2)
python-configglue_1.1.2-0ubuntu3_all.deb Glues together optparse.OptionParser and ConfigParser.ConfigParser
python-configparser_3.3.0r2-2_all.deb backport of the enhanced config parser introduced in Python 3.2
python-configshell_1.6.1~g020d540-2_all.deb framework to create cli interfaces
python-congress_3.0.0+dfsg1-1_all.deb OpenStack Policy as a Service - Python libraries
python-congressclient-doc_1.2.3-2_all.deb client for the open policy framework for the cloud - doc
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