python-cobra_0.4.0b6-1build1_amd64.deb


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Description

python-cobra - constraint-based modeling of biological networks (Python 2)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-cobra
Package version 0.4.0b6
Package release 1build1
Package architecture amd64
Package type deb
Installed size 694 B
Download size 140.74 KB
Official Mirror archive.ubuntu.com
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
This package provides the Python 2 module.

Alternatives

Package Version Architecture Repository
python-cobra_0.4.0b6-1build1_i386.deb 0.4.0b6 i386 Ubuntu Universe
python-cobra - - -

Requires

Name Value
libc6 >= 2.4
libglpk36 >= 4.51
python << 2.8
python >= 2.7~
python-cobra-data = 0.4.0b6-1build1
python-six -
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-cobra_0.4.0b6-1build1_amd64.deb
Source Package python-cobra

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-cobra deb package:
    # sudo apt-get install python-cobra

Files

Path
/usr/lib/python2.7/dist-packages/cobra/VERSION
/usr/lib/python2.7/dist-packages/cobra/__init__.py
/usr/lib/python2.7/dist-packages/cobra/version.py
/usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/cobra-0.4.0b6.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
/usr/lib/python2.7/dist-packages/cobra/core/DictList.py
/usr/lib/python2.7/dist-packages/cobra/core/Formula.py
/usr/lib/python2.7/dist-packages/cobra/core/Gene.py
/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
/usr/lib/python2.7/dist-packages/cobra/core/Model.py
/usr/lib/python2.7/dist-packages/cobra/core/Object.py
/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
/usr/lib/python2.7/dist-packages/cobra/core/Solution.py
/usr/lib/python2.7/dist-packages/cobra/core/Species.py
/usr/lib/python2.7/dist-packages/cobra/core/__init__.py
/usr/lib/python2.7/dist-packages/cobra/design/__init__.py
/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
/usr/lib/python2.7/dist-packages/cobra/io/__init__.py
/usr/lib/python2.7/dist-packages/cobra/io/json.py
/usr/lib/python2.7/dist-packages/cobra/io/mat.py
/usr/lib/python2.7/dist-packages/cobra/io/sbml.py
/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py
/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py
/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.x86_64-linux-gnu.so
/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py
/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py
/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py
/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
/usr/lib/python2.7/dist-packages/cobra/test/__init__.py
/usr/lib/python2.7/dist-packages/cobra/test/data
/usr/lib/python2.7/dist-packages/cobra/test/design.py
/usr/lib/python2.7/dist-packages/cobra/test/flux_analysis.py
/usr/lib/python2.7/dist-packages/cobra/test/io_tests.py
/usr/lib/python2.7/dist-packages/cobra/test/manipulation.py
/usr/lib/python2.7/dist-packages/cobra/test/solvers.py
/usr/lib/python2.7/dist-packages/cobra/test/unit_tests.py
/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
/usr/share/doc/python-cobra/README.md
/usr/share/doc/python-cobra/changelog.Debian.gz
/usr/share/doc/python-cobra/copyright

Changelog

2016-01-19 - Matthias Klose <doko@ubuntu.com>
python-cobra (0.4.0b6-1build1) xenial; urgency=medium
* No-change rebuild to drop python3.4 support.
2015-12-21 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.4.0b6-1) unstable; urgency=medium
* Run autopkgtests from outside the source tree
* Imported Upstream version 0.4.0b6
2015-09-13 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.4.0b4-1) unstable; urgency=medium
* Imported Upstream version 0.4.0b4
2015-08-28 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.4.0b3-1) unstable; urgency=medium
* Imported Upstream version 0.4.0b3
* Removed patch that was applied upstream
* Adjusted autopkgtest commands
* Refreshed quilt patch
2015-08-04 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.4.0b2-1) unstable; urgency=medium
* Adjust package relationships as requested by upstream
* Imported Upstream version 0.4.0b2 (Closes: 794978)
* Require matching version of the data package
* Configured autopkgtests
* Allowed tests to run without python-jsonschema
* Added lintian overrides for python-cobra-data
2015-07-10 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.4.0b1-2) unstable; urgency=medium
* Add more recommended packages in d/control
* Add suggestion of jython for python-cobra
* Really remove jython files from python3-package.
Thanks to Aaron Ucko for the bug report (Closes: 792058)
2015-06-09 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.3.2-1) unstable; urgency=medium
* Initial release (Closes: #788224)
* Add patches to improve Python3 compatibility
* Specify copyright for the externally-contributed modules
* Exclude cobra/test/data/update_pickles.py
* Create package for data and documentation
* Use packaged versions of javascript libraries where available

See Also

Package Description
python-coffin_2.0.1-1_all.deb Jinja2 adapter for Django - Python 2.x
python-cogent-doc_1.5.3-10_all.deb docs for python-cogent
python-cogent_1.5.3-10_amd64.deb framework for genomic biology
python-colander_1.0b1-3_all.deb simple schema-based serialization and deserialization - Python 2.x
python-collada_0.4-2_all.deb Python module for creating, editing and loading COLLADA
python-colorama_0.3.7-1_all.deb Cross-platform colored terminal text in Python - Python 2.x
python-colorlog_2.6.0-1_all.deb formatter to use with the logging module of Python 2
python-comedilib_0.10.2-4_amd64.deb Python wrapper for Comedilib
python-commandnotfound_0.3ubuntu16.04_all.deb Python 2 bindings for command-not-found
python-commando_0.3.4-1.1_all.deb wrapper for argparse to define declaratively
python-compizconfig_0.9.12.2+16.04.20160415-0ubuntu1_amd64.deb Compizconfig bindings for Python
python-confargparse_1.1.20-2build1_amd64.deb argument/configuration file parser with the syntax of argparser (Python 2)
python-configargparse_0.10.0-2_all.deb replacement for argparse with config files and environment variables (Python 2)
python-configglue_1.1.2-0ubuntu3_all.deb Glues together optparse.OptionParser and ConfigParser.ConfigParser
python-configparser_3.3.0r2-2_all.deb backport of the enhanced config parser introduced in Python 3.2
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