python-biopython_1.66+dfsg-1build1_amd64.deb


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Description

python-biopython - Python library for bioinformatics (implemented in Python 2)

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: python-biopython
Package version: 1.66+dfsg
Package release: 1build1
Package architecture: amd64
Package type: deb
Installed size: 7.72 KB
Download size: 1.14 MB
Official Mirror: archive.ubuntu.com
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. This package is targeting Python version 2.

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    Download

    Source package: python-biopython

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install python-biopython deb package:
      # sudo apt-get install python-biopython

    Files

    • /usr/lib/python2.7/dist-packages/biopython-1.66.egg-info
    • /usr/lib/python2.7/dist-packages/Bio/DocSQL.py
    • /usr/lib/python2.7/dist-packages/Bio/File.py
    • /usr/lib/python2.7/dist-packages/Bio/Index.py
    • /usr/lib/python2.7/dist-packages/Bio/LogisticRegression.py
    • /usr/lib/python2.7/dist-packages/Bio/MarkovModel.py
    • /usr/lib/python2.7/dist-packages/Bio/MaxEntropy.py
    • /usr/lib/python2.7/dist-packages/Bio/NaiveBayes.py
    • /usr/lib/python2.7/dist-packages/Bio/ParserSupport.py
    • /usr/lib/python2.7/dist-packages/Bio/Seq.py
    • /usr/lib/python2.7/dist-packages/Bio/SeqFeature.py
    • /usr/lib/python2.7/dist-packages/Bio/SeqRecord.py
    • /usr/lib/python2.7/dist-packages/Bio/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/_utils.py
    • /usr/lib/python2.7/dist-packages/Bio/bgzf.py
    • /usr/lib/python2.7/dist-packages/Bio/cpairwise2.so
    • /usr/lib/python2.7/dist-packages/Bio/kNN.py
    • /usr/lib/python2.7/dist-packages/Bio/pairwise2.py
    • /usr/lib/python2.7/dist-packages/Bio/trie.so
    • /usr/lib/python2.7/dist-packages/Bio/triefind.py
    • /usr/lib/python2.7/dist-packages/Bio/Affy/CelFile.py
    • /usr/lib/python2.7/dist-packages/Bio/Affy/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/AlignInfo.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Generic.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_ClustalOmega.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Clustalw.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Dialign.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_MSAProbs.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Mafft.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Muscle.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Prank.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Probcons.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/_TCoffee.py
    • /usr/lib/python2.7/dist-packages/Bio/Align/Applications/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/ClustalIO.py
    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/EmbossIO.py
    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/FastaIO.py
    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/Interfaces.py
    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/NexusIO.py
    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/PhylipIO.py
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    • /usr/lib/python2.7/dist-packages/Bio/AlignIO/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Alphabet/IUPAC.py
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    • /usr/lib/python2.7/dist-packages/Bio/Alphabet/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Application/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Blast/Applications.py
    • /usr/lib/python2.7/dist-packages/Bio/Blast/NCBIStandalone.py
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    • /usr/lib/python2.7/dist-packages/Bio/Blast/NCBIXML.py
    • /usr/lib/python2.7/dist-packages/Bio/Blast/ParseBlastTable.py
    • /usr/lib/python2.7/dist-packages/Bio/Blast/Record.py
    • /usr/lib/python2.7/dist-packages/Bio/Blast/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/CAPS/__init__.py
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    • /usr/lib/python2.7/dist-packages/Bio/Cluster/cluster.so
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    • /usr/lib/python2.7/dist-packages/Bio/Crystal/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Data/CodonTable.py
    • /usr/lib/python2.7/dist-packages/Bio/Data/IUPACData.py
    • /usr/lib/python2.7/dist-packages/Bio/Data/SCOPData.py
    • /usr/lib/python2.7/dist-packages/Bio/Data/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Emboss/Applications.py
    • /usr/lib/python2.7/dist-packages/Bio/Emboss/Primer3.py
    • /usr/lib/python2.7/dist-packages/Bio/Emboss/PrimerSearch.py
    • /usr/lib/python2.7/dist-packages/Bio/Emboss/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Entrez/Parser.py
    • /usr/lib/python2.7/dist-packages/Bio/Entrez/__init__.py
    • /usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/Docsum_3_0.dtd
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    • /usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd
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    • /usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd
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    Changelog

    2016-01-19 - Matthias Klose <doko@ubuntu.com> python-biopython (1.66+dfsg-1build1) xenial; urgency=medium * No-change rebuild to drop python3.4 support.

    2015-11-08 - Andreas Tille <tille@debian.org> python-biopython (1.66+dfsg-1) unstable; urgency=medium * New upstream version (some patches applied upstream)

    2015-10-06 - Andreas Tille <tille@debian.org> python-biopython (1.65+dfsg-3) unstable; urgency=medium * Also run Tutorial test * Prefer Github as contact point * Build-Depends: python3-mysqldb Closes: #801112

    2015-09-23 - Andreas Tille <tille@debian.org> python-biopython (1.65+dfsg-2) unstable; urgency=medium * Build-Depends & Suggests: phylip + fixed test_phyml_tool Closes: #799820 * debian/clean: Remove test results occuring now since phylip can be used * Activate more tests formerly deactivated

    2015-05-12 - Andreas Tille <tille@debian.org> python-biopython (1.65+dfsg-1) unstable; urgency=medium * New upstream version * Apply fix for broken test from Upstream Git * Versioned (Build-)Depends: python-rdflib (>= 4) * Prevent privacy-breach-logo

    2014-09-24 - Andreas Tille <tille@debian.org> python-biopython (1.64+dfsg-5) unstable; urgency=medium * Exclude samtools test from unit testing for the moment since this package is in flux and it is not clear what architectures will be supported finally * Do not suggest python3 packages in python-biopython and no python package sin python3-biopython * cme fix dpkg-control

    2014-09-01 - Andreas Tille <tille@debian.org> python-biopython (1.64+dfsg-4) unstable; urgency=medium * debian/patches/fix_test_problem_on_powerpc.patch: Patch provided by upstream to run test suite on PowerPC (thanks to Michiel de Hoon <mjldehoon@yahoo.com>) Closes: #751277 * Install egg metadata Closes: #743927 * Add samtools to Build-Depends + Recommends since it is checked in test suite

    2014-08-15 - Andreas Tille <tille@debian.org> python-biopython (1.64+dfsg-3) unstable; urgency=medium * Skip test on mips architecture which is known to fail * Versioned (Build-)Depends wise (>= 2.4.1-16) to make sure tests will pass on each architecture (problems with previous wise on powerpc, s390x)

    2014-06-14 - Andreas Tille <tille@debian.org> python-biopython (1.64+dfsg-2) unstable; urgency=medium * Use HOME in build_dir for testing (thanks to Jakub Wilk <jwilk@debian.org> for the patch) Closes: #751586

    2014-06-08 - Andreas Tille <tille@debian.org> python-biopython (1.64+dfsg-1) unstable; urgency=medium * New upstream version * Build-Depends raxml only on those architectures where it is available Closes: #750845

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