python-biopython_1.66+dfsg-1build1_amd64.deb


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Description

python-biopython - Python library for bioinformatics (implemented in Python 2)

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name python-biopython
Package version 1.66+dfsg
Package release 1build1
Package architecture amd64
Package type deb
Installed size 7.72 KB
Download size 1.14 MB
Official Mirror archive.ubuntu.com
The Biopython Project is an international association
of developers of freely available Python tools for
computational molecular biology.
It is a distributed collaborative effort to develop Python
libraries and applications which address the needs of
current and future work in bioinformatics. The source code
is made available under the Biopython License, which is
extremely liberal and compatible with almost every license in
the world. The project works along with the Open Bioinformatics
Foundation, who generously provide web and CVS space for
the project.
This package is targeting Python version 2.

Alternatives

Package Version Architecture Repository
python-biopython_1.66+dfsg-1build1_i386.deb 1.66+dfsg i386 Ubuntu Universe
python-biopython - - -

Requires

Name Value
libc6 >= 2.14
python << 2.8
python >= 2.7
python-numpy >= 1:1.8.0
python-numpy-abi9 -
python-reportlab -

Download

Type URL
Binary Package python-biopython_1.66+dfsg-1build1_amd64.deb
Source Package python-biopython

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-biopython deb package:
    # sudo apt-get install python-biopython

Files

Path
/usr/lib/python2.7/dist-packages/biopython-1.66.egg-info
/usr/lib/python2.7/dist-packages/Bio/DocSQL.py
/usr/lib/python2.7/dist-packages/Bio/File.py
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/usr/lib/python2.7/dist-packages/Bio/MarkovModel.py
/usr/lib/python2.7/dist-packages/Bio/MaxEntropy.py
/usr/lib/python2.7/dist-packages/Bio/NaiveBayes.py
/usr/lib/python2.7/dist-packages/Bio/ParserSupport.py
/usr/lib/python2.7/dist-packages/Bio/Seq.py
/usr/lib/python2.7/dist-packages/Bio/SeqFeature.py
/usr/lib/python2.7/dist-packages/Bio/SeqRecord.py
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/usr/lib/python2.7/dist-packages/Bio/SeqIO/_index.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CheckSum.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsage.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/MeltingTemp.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParam.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParamData.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/__init__.py
/usr/lib/python2.7/dist-packages/Bio/SeqUtils/lcc.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/Ace.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/Phd.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/__init__.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/__init__.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_bwa.py
/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_samtools.py
/usr/lib/python2.7/dist-packages/Bio/Statistics/__init__.py
/usr/lib/python2.7/dist-packages/Bio/Statistics/lowess.py
/usr/lib/python2.7/dist-packages/Bio/SubsMat/FreqTable.py
/usr/lib/python2.7/dist-packages/Bio/SubsMat/MatrixInfo.py
/usr/lib/python2.7/dist-packages/Bio/SubsMat/__init__.py
/usr/lib/python2.7/dist-packages/Bio/SwissProt/KeyWList.py
/usr/lib/python2.7/dist-packages/Bio/SwissProt/__init__.py
/usr/lib/python2.7/dist-packages/Bio/TogoWS/__init__.py
/usr/lib/python2.7/dist-packages/Bio/UniGene/__init__.py
/usr/lib/python2.7/dist-packages/Bio/UniProt/GOA.py
/usr/lib/python2.7/dist-packages/Bio/UniProt/__init__.py
/usr/lib/python2.7/dist-packages/Bio/Wise/__init__.py
/usr/lib/python2.7/dist-packages/Bio/Wise/dnal.py
/usr/lib/python2.7/dist-packages/Bio/Wise/psw.py
/usr/lib/python2.7/dist-packages/Bio/_py3k/__init__.py
/usr/lib/python2.7/dist-packages/Bio/_py3k/_ordereddict.py
/usr/lib/python2.7/dist-packages/Bio/codonalign/__init__.py
/usr/lib/python2.7/dist-packages/Bio/codonalign/chisq.py
/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalignment.py
/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalphabet.py
/usr/lib/python2.7/dist-packages/Bio/codonalign/codonseq.py
/usr/lib/python2.7/dist-packages/Bio/motifs/__init__.py
/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.so
/usr/lib/python2.7/dist-packages/Bio/motifs/alignace.py
/usr/lib/python2.7/dist-packages/Bio/motifs/mast.py
/usr/lib/python2.7/dist-packages/Bio/motifs/matrix.py
/usr/lib/python2.7/dist-packages/Bio/motifs/meme.py
/usr/lib/python2.7/dist-packages/Bio/motifs/thresholds.py
/usr/lib/python2.7/dist-packages/Bio/motifs/transfac.py
/usr/lib/python2.7/dist-packages/Bio/motifs/applications/__init__.py
/usr/lib/python2.7/dist-packages/Bio/motifs/applications/_alignace.py
/usr/lib/python2.7/dist-packages/Bio/motifs/applications/_xxmotif.py
/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar/__init__.py
/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar/db.py
/usr/share/doc/python-biopython/CONTRIB.gz
/usr/share/doc/python-biopython/DEPRECATED.gz
/usr/share/doc/python-biopython/NEWS.gz
/usr/share/doc/python-biopython/README.Debian
/usr/share/doc/python-biopython/changelog.Debian.gz
/usr/share/doc/python-biopython/copyright

Changelog

2016-01-19 - Matthias Klose <doko@ubuntu.com>
python-biopython (1.66+dfsg-1build1) xenial; urgency=medium
* No-change rebuild to drop python3.4 support.
2015-11-08 - Andreas Tille <tille@debian.org>
python-biopython (1.66+dfsg-1) unstable; urgency=medium
* New upstream version (some patches applied upstream)
2015-10-06 - Andreas Tille <tille@debian.org>
python-biopython (1.65+dfsg-3) unstable; urgency=medium
* Also run Tutorial test
* Prefer Github as contact point
* Build-Depends: python3-mysqldb
Closes: #801112
2015-09-23 - Andreas Tille <tille@debian.org>
python-biopython (1.65+dfsg-2) unstable; urgency=medium
* Build-Depends & Suggests: phylip + fixed test_phyml_tool
Closes: #799820
* debian/clean: Remove test results occuring now since phylip can be used
* Activate more tests formerly deactivated
2015-05-12 - Andreas Tille <tille@debian.org>
python-biopython (1.65+dfsg-1) unstable; urgency=medium
* New upstream version
* Apply fix for broken test from Upstream Git
* Versioned (Build-)Depends: python-rdflib (>= 4)
* Prevent privacy-breach-logo
2014-09-24 - Andreas Tille <tille@debian.org>
python-biopython (1.64+dfsg-5) unstable; urgency=medium
* Exclude samtools test from unit testing for the moment since this
package is in flux and it is not clear what architectures will be
supported finally
* Do not suggest python3 packages in python-biopython and no
python package sin python3-biopython
* cme fix dpkg-control
2014-09-01 - Andreas Tille <tille@debian.org>
python-biopython (1.64+dfsg-4) unstable; urgency=medium
* debian/patches/fix_test_problem_on_powerpc.patch: Patch provided by
upstream to run test suite on PowerPC (thanks to Michiel de Hoon
<mjldehoon@yahoo.com>)
Closes: #751277
* Install egg metadata
Closes: #743927
* Add samtools to Build-Depends + Recommends since it is checked in test
suite
2014-08-15 - Andreas Tille <tille@debian.org>
python-biopython (1.64+dfsg-3) unstable; urgency=medium
* Skip test on mips architecture which is known to fail
* Versioned (Build-)Depends wise (>= 2.4.1-16) to make sure tests
will pass on each architecture (problems with previous wise on
powerpc, s390x)
2014-06-14 - Andreas Tille <tille@debian.org>
python-biopython (1.64+dfsg-2) unstable; urgency=medium
* Use HOME in build_dir for testing (thanks to Jakub Wilk <jwilk@debian.org>
for the patch)
Closes: #751586
2014-06-08 - Andreas Tille <tille@debian.org>
python-biopython (1.64+dfsg-1) unstable; urgency=medium
* New upstream version
* Build-Depends raxml only on those architectures where it is available
Closes: #750845

See Also

Package Description
python-biosig_1.3.0-2.1build1_amd64.deb Python bindings for BioSig library
python-biplist_0.7-1_all.deb Python library for reading/writing Mac OS X binary plists
python-bitarray_0.8.1-1build2_amd64.deb Python module for efficient boolean array handling
python-bitbucket_0.1-1_all.deb Python bindings for the bitbucket.org REST API
python-bitstring-doc_3.1.4-1_all.deb Python module for manipulation of binary data (documentation)
python-bitstring_3.1.4-1_all.deb Python module for manipulation of binary data (Python 2)
python-bittorrent_3.4.2-12_all.deb Scatter-gather network file transfer
python-bjsonrpc_0.2.0-2_all.deb asynchronous bidirectional JSON-RPC protocol over TCP/IP
python-bleach-doc_1.4.2-1_all.deb whitelist-based HTML-sanitizing library (common documentation)
python-bleach_1.4.2-1_all.deb whitelist-based HTML-sanitizing library (Python 2)
python-blessings_1.6-2build1_all.deb simple but powerful module to manage terminal color and styling (Python 2)
python-blist_1.3.6-4build2_amd64.deb List-like type for Python with better asymptotic performance
python-blockdiag_1.4.7-2ubuntu1_all.deb generate block-diagram image file from spec-text file
python-bloom_0.5.20-1_all.deb Bloom is a release automation tool from Robot OS
python-bloomfilter_2.0-1_amd64.deb Native Python implementation of the Bloom filter probabilistic data structure
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