pymol_1.7.2.1-2.2_amd64.deb


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Description

pymol - Molecular Graphics System

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: pymol
Package version: 1.7.2.1
Package release: 2.2
Package architecture: amd64
Package type: deb
Installed size: 17.23 KB
Download size: 4.49 MB
Official Mirror: archive.ubuntu.com
PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.

Alternatives

    Download

    Source package: pymol

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install pymol deb package:
      # sudo apt-get install pymol

    Files

    • /usr/bin/pymol
    • /usr/lib/mime/packages/pymol
    • /usr/lib/python2.7/dist-packages/pymol-1.7.2.1.egg-info
    • /usr/lib/python2.7/dist-packages/chempy/__init__.py
    • /usr/lib/python2.7/dist-packages/chempy/arc.py
    • /usr/lib/python2.7/dist-packages/chempy/bond_amber.py
    • /usr/lib/python2.7/dist-packages/chempy/bond_mmff.py
    • /usr/lib/python2.7/dist-packages/chempy/bonds.py
    • /usr/lib/python2.7/dist-packages/chempy/brick.py
    • /usr/lib/python2.7/dist-packages/chempy/cc1.py
    • /usr/lib/python2.7/dist-packages/chempy/cex.py
    • /usr/lib/python2.7/dist-packages/chempy/charge.py
    • /usr/lib/python2.7/dist-packages/chempy/cif.py
    • /usr/lib/python2.7/dist-packages/chempy/cpv.py
    • /usr/lib/python2.7/dist-packages/chempy/dictdb.py
    • /usr/lib/python2.7/dist-packages/chempy/gamess1.py
    • /usr/lib/python2.7/dist-packages/chempy/gms.py
    • /usr/lib/python2.7/dist-packages/chempy/hetatm.py
    • /usr/lib/python2.7/dist-packages/chempy/io.py
    • /usr/lib/python2.7/dist-packages/chempy/lst.py
    • /usr/lib/python2.7/dist-packages/chempy/mae.py
    • /usr/lib/python2.7/dist-packages/chempy/map.py
    • /usr/lib/python2.7/dist-packages/chempy/mass.py
    • /usr/lib/python2.7/dist-packages/chempy/mmd.py
    • /usr/lib/python2.7/dist-packages/chempy/models.py
    • /usr/lib/python2.7/dist-packages/chempy/mol.py
    • /usr/lib/python2.7/dist-packages/chempy/mol2.py
    • /usr/lib/python2.7/dist-packages/chempy/neighbor.py
    • /usr/lib/python2.7/dist-packages/chempy/pdb.py
    • /usr/lib/python2.7/dist-packages/chempy/pkl.py
    • /usr/lib/python2.7/dist-packages/chempy/place.py
    • /usr/lib/python2.7/dist-packages/chempy/protein.py
    • /usr/lib/python2.7/dist-packages/chempy/protein_amber.py
    • /usr/lib/python2.7/dist-packages/chempy/protein_amber99.py
    • /usr/lib/python2.7/dist-packages/chempy/protein_mmff.py
    • /usr/lib/python2.7/dist-packages/chempy/protein_residues.py
    • /usr/lib/python2.7/dist-packages/chempy/sdf.py
    • /usr/lib/python2.7/dist-packages/chempy/solvate.py
    • /usr/lib/python2.7/dist-packages/chempy/water_amber.py
    • /usr/lib/python2.7/dist-packages/chempy/water_residues.py
    • /usr/lib/python2.7/dist-packages/chempy/xyz.py
    • /usr/lib/python2.7/dist-packages/chempy/bmin/__init__.py
    • /usr/lib/python2.7/dist-packages/chempy/bmin/commands.py
    • /usr/lib/python2.7/dist-packages/chempy/bmin/realtime.py
    • /usr/lib/python2.7/dist-packages/chempy/bmin/state.py
    • /usr/lib/python2.7/dist-packages/chempy/bmin/util.py
    • /usr/lib/python2.7/dist-packages/chempy/champ/__init__.py
    • /usr/lib/python2.7/dist-packages/chempy/champ/_champ.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/chempy/champ/amber99.py
    • /usr/lib/python2.7/dist-packages/chempy/champ/assign.py
    • /usr/lib/python2.7/dist-packages/chempy/champ/formal_charges.py
    • /usr/lib/python2.7/dist-packages/chempy/fast/__init__.py
    • /usr/lib/python2.7/dist-packages/chempy/fragments/__init__.py
    • /usr/lib/python2.7/dist-packages/chempy/tinker/__init__.py
    • /usr/lib/python2.7/dist-packages/chempy/tinker/amber.py
    • /usr/lib/python2.7/dist-packages/chempy/tinker/keyword.py
    • /usr/lib/python2.7/dist-packages/chempy/tinker/realtime.py
    • /usr/lib/python2.7/dist-packages/chempy/tinker/state.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/ColorEditor.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/Demo.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/PMGApp.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/PyMOLMapLoad.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/SetEditor.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/Setting.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/TextEditor.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/__init__.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/volume.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/skins/__init__.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/skins/demo/__init__.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/__init__.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/builder.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/startup/__init__.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py
    • /usr/lib/python2.7/dist-packages/pmg_tk/startup/remote_pdb_load.py
    • /usr/lib/python2.7/dist-packages/pmg_wx/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/_cmd.x86_64-linux-gnu.so
    • /usr/lib/python2.7/dist-packages/pymol/api.py
    • /usr/lib/python2.7/dist-packages/pymol/callback.py
    • /usr/lib/python2.7/dist-packages/pymol/cgo.py
    • /usr/lib/python2.7/dist-packages/pymol/checking.py
    • /usr/lib/python2.7/dist-packages/pymol/cmd.py
    • /usr/lib/python2.7/dist-packages/pymol/colorramping.py
    • /usr/lib/python2.7/dist-packages/pymol/commanding.py
    • /usr/lib/python2.7/dist-packages/pymol/completing.py
    • /usr/lib/python2.7/dist-packages/pymol/computing.py
    • /usr/lib/python2.7/dist-packages/pymol/constants.py
    • /usr/lib/python2.7/dist-packages/pymol/constants_palette.py
    • /usr/lib/python2.7/dist-packages/pymol/controlling.py
    • /usr/lib/python2.7/dist-packages/pymol/creating.py
    • /usr/lib/python2.7/dist-packages/pymol/editing.py
    • /usr/lib/python2.7/dist-packages/pymol/editor.py
    • /usr/lib/python2.7/dist-packages/pymol/experimenting.py
    • /usr/lib/python2.7/dist-packages/pymol/exporting.py
    • /usr/lib/python2.7/dist-packages/pymol/externing.py
    • /usr/lib/python2.7/dist-packages/pymol/feedingback.py
    • /usr/lib/python2.7/dist-packages/pymol/fitting.py
    • /usr/lib/python2.7/dist-packages/pymol/gui.py
    • /usr/lib/python2.7/dist-packages/pymol/headering.py
    • /usr/lib/python2.7/dist-packages/pymol/helping.py
    • /usr/lib/python2.7/dist-packages/pymol/importing.py
    • /usr/lib/python2.7/dist-packages/pymol/internal.py
    • /usr/lib/python2.7/dist-packages/pymol/invocation.py
    • /usr/lib/python2.7/dist-packages/pymol/keyboard.py
    • /usr/lib/python2.7/dist-packages/pymol/keywords.py
    • /usr/lib/python2.7/dist-packages/pymol/locking.py
    • /usr/lib/python2.7/dist-packages/pymol/m4x.py
    • /usr/lib/python2.7/dist-packages/pymol/menu.py
    • /usr/lib/python2.7/dist-packages/pymol/monitoring.py
    • /usr/lib/python2.7/dist-packages/pymol/movie.py
    • /usr/lib/python2.7/dist-packages/pymol/moving.py
    • /usr/lib/python2.7/dist-packages/pymol/parser.py
    • /usr/lib/python2.7/dist-packages/pymol/parsing.py
    • /usr/lib/python2.7/dist-packages/pymol/povray.py
    • /usr/lib/python2.7/dist-packages/pymol/preset.py
    • /usr/lib/python2.7/dist-packages/pymol/querying.py
    • /usr/lib/python2.7/dist-packages/pymol/rpc.py
    • /usr/lib/python2.7/dist-packages/pymol/selecting.py
    • /usr/lib/python2.7/dist-packages/pymol/selector.py
    • /usr/lib/python2.7/dist-packages/pymol/setting.py
    • /usr/lib/python2.7/dist-packages/pymol/shortcut.py
    • /usr/lib/python2.7/dist-packages/pymol/util.py
    • /usr/lib/python2.7/dist-packages/pymol/vfont.py
    • /usr/lib/python2.7/dist-packages/pymol/viewing.py
    • /usr/lib/python2.7/dist-packages/pymol/wizarding.py
    • /usr/lib/python2.7/dist-packages/pymol/xray.py
    • /usr/lib/python2.7/dist-packages/pymol/xwin.py
    • /usr/lib/python2.7/dist-packages/pymol/contrib/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/anaglyph.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/anaglyph_header.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/bg.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/bg.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/call_compute_color_for_light.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/compute_color_for_light.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/compute_fog_color.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/cylinder.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/cylinder.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/cylinder_no_ff.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/default.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/default.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/default_es.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/default_es.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/default_es2.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/default_es2.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/defaultscreen.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/defaultscreen.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/indicator.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/indicator.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/label.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/label.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/labelscreen.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/labelscreen.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/ramp.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/ramp.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/screen.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/screen.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/shadertext.txt
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/sphere.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/sphere.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/sphere_arb_fs.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/sphere_arb_vs.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/spheredirect.vs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/volume.fs
    • /usr/lib/python2.7/dist-packages/pymol/data/shaders/volume.vs
    • /usr/lib/python2.7/dist-packages/pymol/embed/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/embed/epymol/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/embed/wxpymol/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/opengl/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/opengl/gl/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/opengl/glu/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/opengl/glut/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/plugins/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/plugins/installation.py
    • /usr/lib/python2.7/dist-packages/pymol/plugins/legacysupport.py
    • /usr/lib/python2.7/dist-packages/pymol/plugins/managergui.py
    • /usr/lib/python2.7/dist-packages/pymol/plugins/repository.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/annotation.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/appearance.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/benchmark.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/box.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/charge.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/cleanup.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/demo.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/density.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/distance.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/dragging.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/fedora.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/filter.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/label.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/measurement.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/message.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/mutagenesis.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/pair_fit.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/pseudoatom.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/renaming.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/sculpting.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/security.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/stereodemo.py
    • /usr/lib/python2.7/dist-packages/pymol/wizard/toggle.py
    • /usr/lib/python2.7/dist-packages/pymol2/__init__.py
    • /usr/lib/python2.7/dist-packages/pymol2/cmd2.py
    • /usr/lib/python2.7/dist-packages/pymol2/make_cmd2.py
    • /usr/lib/python2.7/dist-packages/web/pymolhttpd.py
    • /usr/lib/python2.7/dist-packages/web/examples/justhttpd.py
    • /usr/share/applications/pymol.desktop
    • /usr/share/doc-base/pymol-ref-card
    • /usr/share/doc/pymol/AUTHORS
    • /usr/share/doc/pymol/DEVELOPERS
    • /usr/share/doc/pymol/README.Debian
    • /usr/share/doc/pymol/README.gz
    • /usr/share/doc/pymol/TODO.Debian
    • /usr/share/doc/pymol/changelog.Debian.gz
    • /usr/share/doc/pymol/copyright
    • /usr/share/doc/pymol/pymol-ref-card.pdf.gz
    • /usr/share/doc/pymol/examples/1tii.pdb
    • /usr/share/doc/pymol/examples/3al1.pdb
    • /usr/share/doc/pymol/examples/generate_amber.py
    • /usr/share/doc/pymol/examples/generate_mmff.py
    • /usr/share/doc/pymol/examples/helix_amber.pdb
    • /usr/share/doc/pymol/examples/il2.pdb
    • /usr/share/doc/pymol/examples/names.pdb
    • /usr/share/doc/pymol/examples/odd01.pdb
    • /usr/share/doc/pymol/examples/odd02.pdb
    • /usr/share/doc/pymol/examples/pept.pdb
    • /usr/share/doc/pymol/examples/povray01.py
    • /usr/share/doc/pymol/examples/small02.pdb
    • /usr/share/doc/pymol/examples/tiny.pdb
    • /usr/share/doc/pymol/examples/water.pdb
    • /usr/share/man/man1/pymol.1.gz
    • /usr/share/menu/pymol
    • /usr/share/pixmaps/pymol.xpm
    • /usr/share/pymol/data/chempy/water.pdb
    • /usr/share/pymol/data/chempy/fragments/ace.pkl
    • /usr/share/pymol/data/chempy/fragments/acetylene.pkl
    • /usr/share/pymol/data/chempy/fragments/ala.pkl
    • /usr/share/pymol/data/chempy/fragments/arg.pkl
    • /usr/share/pymol/data/chempy/fragments/argn.pkl
    • /usr/share/pymol/data/chempy/fragments/asn.pkl
    • /usr/share/pymol/data/chempy/fragments/asp.pkl
    • /usr/share/pymol/data/chempy/fragments/asph.pkl
    • /usr/share/pymol/data/chempy/fragments/benzene.pkl
    • /usr/share/pymol/data/chempy/fragments/benzocycloheptane.pkl
    • /usr/share/pymol/data/chempy/fragments/butane.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_ala.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_arg.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_argn.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_asn.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_asp.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_asph.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_cys.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_gln.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_glu.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_gluh.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_gly.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_hid.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_hie.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_hip.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_his.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_ile.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_leu.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_lys.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_lysn.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_met.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_phe.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_pro.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_ser.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_thr.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_trp.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_tyr.pkl
    • /usr/share/pymol/data/chempy/fragments/ct_val.pkl
    • /usr/share/pymol/data/chempy/fragments/cyanide.pkl
    • /usr/share/pymol/data/chempy/fragments/cyclobutane.pkl
    • /usr/share/pymol/data/chempy/fragments/cycloheptane.pkl
    • /usr/share/pymol/data/chempy/fragments/cyclohexane.pkl
    • /usr/share/pymol/data/chempy/fragments/cyclopentadiene.pkl
    • /usr/share/pymol/data/chempy/fragments/cyclopentane.pkl
    • /usr/share/pymol/data/chempy/fragments/cyclopropane.pkl
    • /usr/share/pymol/data/chempy/fragments/cys.pkl
    • /usr/share/pymol/data/chempy/fragments/ethylene.pkl
    • /usr/share/pymol/data/chempy/fragments/formaldehyde.pkl
    • /usr/share/pymol/data/chempy/fragments/formamide.pkl
    • /usr/share/pymol/data/chempy/fragments/formic.pkl
    • /usr/share/pymol/data/chempy/fragments/gln.pkl
    • /usr/share/pymol/data/chempy/fragments/glu.pkl
    • /usr/share/pymol/data/chempy/fragments/gluh.pkl
    • /usr/share/pymol/data/chempy/fragments/gly.pkl
    • /usr/share/pymol/data/chempy/fragments/hid.pkl
    • /usr/share/pymol/data/chempy/fragments/hie.pkl
    • /usr/share/pymol/data/chempy/fragments/hip.pkl
    • /usr/share/pymol/data/chempy/fragments/his.pkl
    • /usr/share/pymol/data/chempy/fragments/ile.pkl
    • /usr/share/pymol/data/chempy/fragments/indane.pkl
    • /usr/share/pymol/data/chempy/fragments/leu.pkl
    • /usr/share/pymol/data/chempy/fragments/lys.pkl
    • /usr/share/pymol/data/chempy/fragments/lysn.pkl
    • /usr/share/pymol/data/chempy/fragments/met.pkl
    • /usr/share/pymol/data/chempy/fragments/methane.pkl
    • /usr/share/pymol/data/chempy/fragments/methanol.pkl
    • /usr/share/pymol/data/chempy/fragments/napthylene.pkl
    • /usr/share/pymol/data/chempy/fragments/nhh.pkl
    • /usr/share/pymol/data/chempy/fragments/nitro.pkl
    • /usr/share/pymol/data/chempy/fragments/nme.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_ala.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_arg.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_argn.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_asn.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_asp.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_asph.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_cys.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_gln.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_glu.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_gluh.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_gly.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_hid.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_hie.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_hip.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_his.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_ile.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_leu.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_lys.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_lysn.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_met.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_phe.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_pro.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_ser.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_thr.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_trp.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_tyr.pkl
    • /usr/share/pymol/data/chempy/fragments/nt_val.pkl
    • /usr/share/pymol/data/chempy/fragments/peptide.pkl
    • /usr/share/pymol/data/chempy/fragments/phe.pkl
    • /usr/share/pymol/data/chempy/fragments/phosphite.pkl
    • /usr/share/pymol/data/chempy/fragments/pro.pkl
    • /usr/share/pymol/data/chempy/fragments/realtime.pkl
    • /usr/share/pymol/data/chempy/fragments/ser.pkl
    • /usr/share/pymol/data/chempy/fragments/sulfone.pkl
    • /usr/share/pymol/data/chempy/fragments/thr.pkl
    • /usr/share/pymol/data/chempy/fragments/trifluoromethane.pkl
    • /usr/share/pymol/data/chempy/fragments/trp.pkl
    • /usr/share/pymol/data/chempy/fragments/tyr.pkl
    • /usr/share/pymol/data/chempy/fragments/val.pkl
    • /usr/share/pymol/data/chempy/sidechains/generate1.py
    • /usr/share/pymol/data/chempy/sidechains/generate2.py
    • /usr/share/pymol/data/chempy/sidechains/sc_bb_dep.pkl
    • /usr/share/pymol/data/chempy/sidechains/sc_bb_dep.py
    • /usr/share/pymol/data/chempy/sidechains/sc_bb_ind.pkl
    • /usr/share/pymol/data/chempy/sidechains/sc_bb_ind.py
    • /usr/share/pymol/data/chempy/sidechains/sc_library.pkl
    • /usr/share/pymol/data/chempy/tinker/Makefile.delsci
    • /usr/share/pymol/data/chempy/tinker/chempy.prm
    • /usr/share/pymol/data/chempy/tinker/make99_simple.py
    • /usr/share/pymol/data/chempy/tinker/make_simple.py
    • /usr/share/pymol/data/chempy/tinker/parm94.dat
    • /usr/share/pymol/data/chempy/tinker/parm94_rsm.dat
    • /usr/share/pymol/data/chempy/tinker/parm96.dat
    • /usr/share/pymol/data/chempy/tinker/parm96_rsm.dat
    • /usr/share/pymol/data/chempy/tinker/parm99.dat
    • /usr/share/pymol/data/chempy/tinker/parm99_simple.dat
    • /usr/share/pymol/data/chempy/tinker/parm99_wld.dat
    • /usr/share/pymol/data/chempy/tinker/parm_simple.dat
    • /usr/share/pymol/data/chempy/tinker/parm_simple.inp
    • /usr/share/pymol/data/demo/1hpv.r3d
    • /usr/share/pymol/data/demo/1tii.pdb
    • /usr/share/pymol/data/demo/cgo03.py
    • /usr/share/pymol/data/demo/il2.pdb
    • /usr/share/pymol/data/demo/pept.pdb
    • /usr/share/pymol/data/demo/pept.pkl
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro5.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro5.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro6.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro6.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro65.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro65.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro66.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro66.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro67.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/aro67.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc3.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc3.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc4.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc4.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc5.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc5.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc6.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc6.xbm
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc7.gif
    • /usr/share/pymol/data/pmg_tk/bitmaps/builder/cyc7.xbm
    • /usr/share/pymol/data/pymol/cmyk.png
    • /usr/share/pymol/data/pymol/hsv.ppm
    • /usr/share/pymol/data/pymol/splash.png
    • /usr/share/pymol/data/pymol/matrices/BLOSUM62
    • /usr/share/pymol/data/shaders/anaglyph.fs
    • /usr/share/pymol/data/shaders/anaglyph_header.fs
    • /usr/share/pymol/data/shaders/bg.fs
    • /usr/share/pymol/data/shaders/bg.vs
    • /usr/share/pymol/data/shaders/call_compute_color_for_light.fs
    • /usr/share/pymol/data/shaders/compute_color_for_light.fs
    • /usr/share/pymol/data/shaders/compute_fog_color.fs
    • /usr/share/pymol/data/shaders/cylinder.fs
    • /usr/share/pymol/data/shaders/cylinder.vs
    • /usr/share/pymol/data/shaders/cylinder_no_ff.fs
    • /usr/share/pymol/data/shaders/default.fs
    • /usr/share/pymol/data/shaders/default.vs
    • /usr/share/pymol/data/shaders/default_es.fs
    • /usr/share/pymol/data/shaders/default_es.vs
    • /usr/share/pymol/data/shaders/default_es2.fs
    • /usr/share/pymol/data/shaders/default_es2.vs
    • /usr/share/pymol/data/shaders/defaultscreen.fs
    • /usr/share/pymol/data/shaders/defaultscreen.vs
    • /usr/share/pymol/data/shaders/indicator.fs
    • /usr/share/pymol/data/shaders/indicator.vs
    • /usr/share/pymol/data/shaders/label.fs
    • /usr/share/pymol/data/shaders/label.vs
    • /usr/share/pymol/data/shaders/labelscreen.fs
    • /usr/share/pymol/data/shaders/labelscreen.vs
    • /usr/share/pymol/data/shaders/ramp.fs
    • /usr/share/pymol/data/shaders/ramp.vs
    • /usr/share/pymol/data/shaders/screen.fs
    • /usr/share/pymol/data/shaders/screen.vs
    • /usr/share/pymol/data/shaders/shadertext.txt
    • /usr/share/pymol/data/shaders/sphere.fs
    • /usr/share/pymol/data/shaders/sphere.vs
    • /usr/share/pymol/data/shaders/sphere_arb_fs.fs
    • /usr/share/pymol/data/shaders/sphere_arb_vs.vs
    • /usr/share/pymol/data/shaders/spheredirect.vs
    • /usr/share/pymol/data/shaders/volume.fs
    • /usr/share/pymol/data/shaders/volume.vs
    • /usr/share/pymol/data/tut/1hpv.pdb
    • /usr/share/pymol/data/xray/atomformfactor2.dat
    • /usr/share/pymol/data/xray/atomformfactor5.dat
    • /usr/share/pymol/data/xray/spgbase.dat
    • /usr/share/pymol/scripts/metaphorics/alignment.pml
    • /usr/share/pymol/scripts/metaphorics/annotate.pml
    • /usr/share/pymol/scripts/metaphorics/fedora.pml
    • /usr/share/python/runtime.d/pymol.rtupdate

    Changelog

    2016-01-22 - Gianfranco Costamagna <locutusofborg@debian.org> pymol (1.7.2.1-2.2) unstable; urgency=medium * Non-maintainer upload. * Change libpng12-0-dev build-dependency to libpng-dev, to ease libpng transition. (Closes: #809840)

    2015-08-22 - Matthias Klose <doko@debian.org> pymol (1.7.2.1-2.1) unstable; urgency=medium * Non-maintainer upload. * Build using dh-python. Closes: #786121.

    2015-06-13 - Michael Banck <mbanck@debian.org> pymol (1.7.2.1-2) unstable; urgency=medium * debian/patches/21_fix_png_batch_mode.patch: Removed, broke functionality.

    2014-09-14 - Michael Banck <mbanck@debian.org> pymol (1.7.2.1-1) unstable; urgency=low * New upstream point release. * debian/patches/31_fix_format-security.patch: New patch, fixes FTBFS bug with -Werror=format-security (closes: #759860).

    2014-05-21 - Michael Banck <mbanck@debian.org> pymol (1.7.1.3-1) unstable; urgency=low * New upstream point release. * debian/patches/30_pymol_data_path.patch: Removed: applied upstream.

    2014-01-20 - Michael Banck <mbanck@debian.org> pymol (1.7.0.0-1) unstable; urgency=low * New upstream release. * debian/patches/30_pymol_data_path.patch: New patch, uses PYMOL_DATA instead of PYMOL_PATH environment variable for data file location.

    2013-10-03 - Sergei Golovan <sgolovan@debian.org> pymol (1.6.0.0-1.1) unstable; urgency=low * Non-maintainer upload. * Replaced the obsolete tk8.4-dev by tk-dev in build dependencies.

    2013-08-08 - Debichem Team <debichem-devel@lists.alioth.debian.org> pymol (1.6.0.0-1) unstable; urgency=low * New upstream prelease. - Fixes session saving/loading (closes: #668586). [ Michael Banck ] * debian/patches/11_fix__cmd_import.patch: Removed, no longer needed. * debian/patches/26_subversion_updates.patch: Likewise. * debian/pymol.install: Install data and scripts directories under /usr/share/pymol, as intended by upstream. * debian/pymol.launch.in: Updated for new data path location. * debian/patches/05_examples_data_path.patch: Removed, no longer needed. * debian/patches/09_chempy_data_path.patch: Likewise. * debian/patches/13_activate_vmd_plugin.patch: Likewise. * debian/patches/17_cmyk_png_data_path.patch: Likewise. * debian/patches/19_blosum_matrix_path.patch: Likewise. * debian/patches/20_output_license_terms.patch: Likewise. * debian/patches/25_ignore_setup_clean_errors.patch: Likewise. * debian/rules (override_dh_auto_clean): Do not abort on failure and remove * redundant call to setup.py. * debian/patches/22_fix_pymol_import.patch: Change the value of $PYMOL_PATH to the one found by find_module('pymol'). * debian/patches/28_no_data_install_in_python_path.patch: New patch, skips installation of the data (and examples, test) directories into the pymol path. * debian/patches/29_fix_path_to_splash.patch: New patch, changes search path for splash image from $PYMOL_PATH to $PYMOL_DATA. * debian/patches/series: Disable 24_autodock_plugin.patch for now, as it does work currently. * debian/control (Standards-Version): Bumped to 3.9.4. [ Daniel Leidert ] * debian/control (Uploaders): Removed myself. (Depends): Added python-numpy (LP: #1076104). (Suggests): Added chemical-mime-data. * debian/gnome-pymol.desktop: Dropped unused file. * debian/pymol.desktop (MimeType, Exec): Additions (LP: #1087265). * debian/pymol.launch.in: Environmental path variables (LP: #925445). * debian/upstream: Minor additions.

    2012-05-02 - Michael Banck <mbanck@debian.org> pymol (1.5.0.1-2) unstable; urgency=low * debian/patches/26_subversion_updates.patch: New patch, includes the fixes from subversion since 1.5.0.1 up to revision 3996. * debian/upstream: New file. * debian/pymolRef.tex: Updated with latest version from http://www.pymolwiki.org/index.php/CheatSheet.

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