proteinortho_5.11+dfsg-1_amd64.deb


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Description

proteinortho - Detection of (Co-)orthologs in large-scale protein analysis

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: proteinortho
Package version: 5.11+dfsg
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 363 B
Download size: 237.49 KB
Official Mirror: archive.ubuntu.com
Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Alternatives

    Download

    Source package: proteinortho

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install proteinortho deb package:
      # sudo apt-get install proteinortho

    Files

    • /usr/bin/proteinortho5
    • /usr/lib/proteinortho/ffadj_mcs.py
    • /usr/lib/proteinortho/proteinortho5.pl
    • /usr/lib/proteinortho/proteinortho5_clean_edges2.pl
    • /usr/lib/proteinortho/proteinortho5_clustering
    • /usr/lib/proteinortho/proteinortho5_singletons.pl
    • /usr/share/doc/proteinortho/README.test
    • /usr/share/doc/proteinortho/changelog.Debian.gz
    • /usr/share/doc/proteinortho/copyright
    • /usr/share/doc/proteinortho/run-unit-test
    • /usr/share/doc/proteinortho/examples/C.faa.gz
    • /usr/share/doc/proteinortho/examples/C.gff.gz
    • /usr/share/doc/proteinortho/examples/E.faa.gz
    • /usr/share/doc/proteinortho/examples/E.gff.gz
    • /usr/share/doc/proteinortho/examples/L.faa.gz
    • /usr/share/doc/proteinortho/examples/L.gff
    • /usr/share/doc/proteinortho/examples/M.faa.gz
    • /usr/share/doc/proteinortho/examples/M.gff
    • /usr/share/doc/proteinortho/examples/chk_test.pl
    • /usr/share/doc/proteinortho/tools/comp_bla.pl
    • /usr/share/doc/proteinortho/tools/grab_proteins.pl
    • /usr/share/man/man1/proteinortho5.1.gz

    Changelog

    2015-11-13 - Andreas Tille <tille@debian.org> proteinortho (5.11+dfsg-1) unstable; urgency=low * Initial release (Closes: #804995)

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