proftmb_1.1.12-3_amd64.deb


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Description

proftmb - per-residue prediction of bacterial transmembrane beta barrels

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: proftmb
Package version: 1.1.12
Package release: 3
Package architecture: amd64
Package type: deb
Installed size: 849 B
Download size: 388.23 KB
Official Mirror: archive.ubuntu.com
proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. For each query protein, proftmb provides both a Z-value indicating that the protein actually contains a membrane barrel, and a four-state per-residue labeling of upward- and downward-facing strands, periplasmic hairpins and extracellular loops.

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    Source package: proftmb

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install proftmb deb package:
      # sudo apt-get install proftmb

    Files

    • /usr/bin/proftmb
    • /usr/share/doc/proftmb/README
    • /usr/share/doc/proftmb/changelog.Debian.gz
    • /usr/share/doc/proftmb/copyright
    • /usr/share/doc/proftmb/examples/16761001.Q
    • /usr/share/doc/proftmb/examples/1a0s_P.f.1.Q.gz
    • /usr/share/doc/proftmb/examples/1af6_A.f.2.Q.gz
    • /usr/share/doc/proftmb/examples/1bt9_A.f.3.Q.gz
    • /usr/share/doc/proftmb/examples/1fep_A.f.4.Q.gz
    • /usr/share/doc/proftmb/examples/1prn.f.5.Q.gz
    • /usr/share/doc/proftmb/examples/1qd5_A.f.6.Q.gz
    • /usr/share/doc/proftmb/examples/1qj9_A.f.7.Q.gz
    • /usr/share/doc/proftmb/examples/1qjp_A.f.8.Q.gz
    • /usr/share/doc/proftmb/examples/CADN_HUMAN.Q.gz
    • /usr/share/doc/proftmb/examples/YQIB_ECOLI.Q.gz
    • /usr/share/doc/proftmb/examples/example.Q
    • /usr/share/doc/proftmb/examples/example_dat.txt.gz
    • /usr/share/doc/proftmb/examples/example_proftmb_pretty.txt
    • /usr/share/doc/proftmb/examples/example_proftmb_tabular.txt
    • /usr/share/man/man1/proftmb.1.gz
    • /usr/share/proftmb/Makefile
    • /usr/share/proftmb/Makefile.am
    • /usr/share/proftmb/Makefile.in
    • /usr/share/proftmb/ModelArchitecture
    • /usr/share/proftmb/NCBIGnegComp
    • /usr/share/proftmb/ReduxDecode4
    • /usr/share/proftmb/StateRedux4
    • /usr/share/proftmb/StrandStates
    • /usr/share/proftmb/Swiss8.arch
    • /usr/share/proftmb/Swiss8.params
    • /usr/share/proftmb/Swiss_Zcurve
    • /usr/share/proftmb/TrainedParams
    • /usr/share/proftmb/ZCalibration
    • /usr/share/proftmb/bact.comp
    • /usr/share/proftmb/options
    • /usr/share/proftmb/proftmb.opt

    Changelog

    2015-12-07 - Andreas Tille <tille@debian.org> proftmb (1.1.12-3) unstable; urgency=medium [ Bas Couwenberg ] * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev. Closes: #807222 [ Andreas Tille ] * cme fix dpkg-control * DEP5 fix

    2014-06-03 - Andreas Tille <tille@debian.org> proftmb (1.1.12-2) unstable; urgency=medium [ Andreas Tille ] * moved debian/upstream to debian/upstream/metadata [ Cyril Brulebois ] * Replace 'dnl' with '#' in src/Makefile.{am,in} (Closes: #750165). [ Andreas Tille ] * cme fix dpkg-control * Priority: optional * debhelper 9 * simplify debian/rules

    2012-09-20 - Laszlo Kajan <lkajan@rostlab.org> proftmb (1.1.12-1) unstable; urgency=low * New upstream release.

    2012-09-04 - Laszlo Kajan <lkajan@rostlab.org> proftmb (1.1.11-1) unstable; urgency=low * Added debug package. * New upstream release.

    2012-02-20 - Laszlo Kajan <lkajan@rostlab.org> proftmb (1.1.10-1) unstable; urgency=low * New upstream release

    2012-02-17 - Laszlo Kajan <lkajan@rostlab.org> proftmb (1.1.9-1) unstable; urgency=low * New upstream release

    2012-02-15 - Laszlo Kajan <lkajan@rostlab.org> proftmb (1.1.8-1) unstable; urgency=low * Initial release (Closes: #659964)

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