prodigal_2.6.2-2_amd64.deb


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Description

prodigal - Microbial (bacterial and archaeal) gene finding program

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: prodigal
Package version: 2.6.2
Package release: 2
Package architecture: amd64
Package type: deb
Installed size: 11.90 KB
Download size: 671.13 KB
Official Mirror: archive.ubuntu.com
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include: Speed: Prodigal is an extremely fast gene recognition tool (written in very vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accuracy: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly). Specificity: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%. GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations. Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences even when the organism is unknown. Ease of Use: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own.

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    Source package: prodigal

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install prodigal deb package:
      # sudo apt-get install prodigal

    Files

    • /usr/bin/prodigal
    • /usr/share/doc/prodigal/README.md
    • /usr/share/doc/prodigal/changelog.Debian.gz
    • /usr/share/doc/prodigal/copyright
    • /usr/share/man/man1/prodigal.1.gz

    Changelog

    2015-07-11 - Andreas Tille <tille@debian.org> prodigal (1:2.6.2-2) unstable; urgency=medium [ Michael R. Crusoe ] * New upstream version [ Andreas Tille ] * cme fix dpkg-control

    2014-09-16 - Andreas Tille <tille@debian.org> prodigal (1:2.6.1-1) unstable; urgency=medium * New upstream version (adapted patches) * Add citation * `cme fix dpkg-control` to fix Vcs-Browser * Add myself as Uploader * Use manually created manpage since help2man does a bad job Closes: #761684 * d/watch: code moved to Github and changed versioning scheme * d/rules: override_dh_auto_install to prevent installing to /usr/local

    2014-07-28 - Olivier Sallou <osallou@debian.org> prodigal (2.60-1) unstable; urgency=low * Initial release (Closes: #756291).

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