proda - multiple alignment of protein sequences

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name proda
Package version 1.0
Package release 9
Package architecture amd64
Package type deb
Installed size 172 B
Download size 48.40 KB
Official Mirror
ProDA is a system for automated detection and alignment of homologous
regions in collections of proteins with arbitrary domain architectures.
Given an input set of unaligned sequences, ProDA identifies all
homologous regions appearing in one or more sequences, and returns a
collection of local multiple alignments for these regions.


Package Version Architecture Repository
proda_1.0-9_i386.deb 1.0 i386 Ubuntu Universe
proda - - -


Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 4.9


Type URL
Binary Package proda_1.0-9_amd64.deb
Source Package proda

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install proda deb package:
    # sudo apt-get install proda




2016-01-11 - Andreas Tille <>
proda (1.0-9) unstable; urgency=low
* debian/control: re-added David to uploaders, because he really
wanted to remain there
* moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* DEP5
* propagate hardening options
2012-03-29 - Andreas Tille <>
proda (1.0-8) unstable; urgency=low
[ Charles Plessy ]
* Documented information in ‘debian/upstream’.
* Removed mention of the bibliographic reference in ‘debian/control’.
[ Andreas Tille ]
* debian/control:
- Replaced David Paleino as Uploader by myself because David seems
to have dropped his name from all Debian Med packages
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- Dropped quilt and cdbs from Build-Depends
* debian/source/format: 3.0 (quilt)
* debian/rules: short dh format
2008-07-04 - Charles Plessy <>
proda (1.0-7) unstable; urgency=low
* debian/rules: swiched to CDBS (Closes: #486959).
This delegates the support of parallel building to CDBS.
* debian/control:
- Added build-dependancy on CDBS.
- Reverted to Standards-Version 3.7.3 because of lack of
`debian/README.source' to explain the patch system.
2008-06-26 - Charles Plessy <>
proda (1.0-6) unstable; urgency=low
* debian/patches/*.patch: documented and forwarded upstream.
* debian/patches/03-fix_FTBFS_gcc4.3_missing_includes.patch:
Added `include <cstdio>' to `AlignedFragment.h' (Closes: #486959).
* debian/copyright:
- Updated to the latest version of the machine-readable format.
- Relicenced packaging to 'same as Proda itself'.
- Added myself to the Hall of Fame.
* debian/control: added myself as uploader.
2008-06-11 - David Paleino <>
proda (1.0-5) unstable; urgency=low
Maintenance release.
[ Charles Plessy ]
* debian/proda.1.xml, debian/rules: semicosmetic change to indicate the path
to the XSL stylesheet from within the XML source.
[ David Paleino ]
* debian/copyright updated to a machine-readable format.
* debian/copyright-old removed
* debian/control:
- updated Standards-Version to 3.8.0
+ enabled parallel building in debian/rules
- updated debhelper dependency on >= 6 (also debian/compat)
2007-12-16 - David Paleino <>
proda (1.0-4) unstable; urgency=low
* debian/patches - switching to quilt:
- 00list removed
- 01-fix_gcc4.3_warnings.dpatch removed
- 02-fix_CXXFLAGS.dpatch removed
- series added
- 01-fix_gcc4.3_warnings.patch added
- 02-fix_CXXFLAGS.patch added
- 03-fix_FTBFS_gcc4.3_missing_includes.patch added (closes: #455269)
* debian/control - B-D updated, switching to quilt
* debian/rules:
- patch system updated, switching to quilt
- adding "manpages" and "proda.1" rules for easier generation of
the manpage in the future
* debian/manpage.xml moved to debian/proda.1.xml
* Updated Standards-Version to 3.7.3
2007-09-30 - David Paleino <>
proda (1.0-3) unstable; urgency=low
[ Charles Plessy ]
* Moved the Homepage: field out from the package's description.
[ David Paleino ]
* CXXFLAGS are no more hardcoded into the Makefile (added
* debian/control: removing dependencies for manpage generation - it is
static now (there's no point in building always the same manpage on
different archs)
* debian/proda.1 added
* debian/manpage.xml removed
* debian/rules edited to reflect the changes above
2007-04-25 - David Paleino <>
proda (1.0-2) unstable; urgency=low
* Fixed gcc4.3 warnings
2007-04-24 - David Paleino <>
proda (1.0-1) unstable; urgency=low
* Initial release (Closes: #408347)

See Also

Package Description
prodigal_2.6.2-2_amd64.deb Microbial (bacterial and archaeal) gene finding program
profanity_0.4.7-1build1_amd64.deb console based XMPP client
profbval_1.0.22-2_all.deb predictor of flexible/rigid protein residues from sequence
profisis_1.0.11-2_all.deb prediction of protein-protein interaction sites from sequence
profnet-bval_1.0.22-2_amd64.deb neural network architecture for profbval
profnet-chop_1.0.22-2_amd64.deb neural network architecture for profchop
profnet-con_1.0.22-2_amd64.deb neural network architecture for profcon
profnet-isis_1.0.22-2_amd64.deb neural network architecture for profisis
profnet-md_1.0.22-2_amd64.deb neural network architecture for metadisorder
profnet-norsnet_1.0.22-2_amd64.deb neural network architecture for norsnet
profnet-prof_1.0.22-2_amd64.deb neural network architecture for profacc
profnet-snapfun_1.0.22-2_amd64.deb neural network architecture for snapfun
profphd-net_1.0.22-2_amd64.deb neural network architecture for profphd
profphd-utils_1.0.10-2_amd64.deb profphd helper utilities convert_seq and filter_hssp
profphd_1.0.42-1_all.deb secondary structure and solvent accessibility predictor