probcons_1.12-10_amd64.deb


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Description

probcons - PROBabilistic CONSistency-based multiple sequence alignment

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: probcons
Package version: 1.12
Package release: 10
Package architecture: amd64
Package type: deb
Installed size: 351 B
Download size: 101.43 KB
Official Mirror: archive.ubuntu.com
Tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14% more correctly aligned columns than those of DIALIGN.

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    Source package: probcons

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install probcons deb package:
      # sudo apt-get install probcons

    Files

    • /usr/bin/probcons
    • /usr/bin/probcons-RNA
    • /usr/share/doc/probcons/README.Debian
    • /usr/share/doc/probcons/README.gz
    • /usr/share/doc/probcons/changelog.Debian.gz
    • /usr/share/doc/probcons/copyright
    • /usr/share/man/man1/probcons-RNA.1.gz
    • /usr/share/man/man1/probcons.1.gz

    Changelog

    2015-12-15 - Andreas Tille <tille@debian.org> probcons (1.12-10) unstable; urgency=medium * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control * DEP5 fix * DEP3 fix * Propagate hardening options * spelling in manpage * Fix Mayhem bugs Closes: #716581, #716505

    2012-04-03 - Andreas Tille <tille@debian.org> probcons (1.12-9) unstable; urgency=low [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream [ Andreas Tille ] * debian/upstream: Moved DOI+PMID to references * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Fixed Vcs fields * debian/copyright: Uhmm, this package had no copyright file at all! * debian/README.source: deleted redundant handling advises for quilt * debian/{compat,control}: debhelper 9

    2011-05-02 - Andreas Tille <tille@debian.org> probcons (1.12-8) unstable; urgency=low * Standards-Version: 3.9.2 (no changes needed) * debian/patches/fix-gcc-4.6.patch: Fix gcc-4.6 build issue Closes: #625036

    2011-01-04 - Charles Plessy <plessy@debian.org> probcons (1.12-7) unstable; urgency=low * Use dh for debian/rules, which will also switch off parallel building (Closes: #607729, #608710). * Switch to Debhelper 8 (debian/control, debian/compat).

    2010-12-21 - Andreas Tille <tille@debian.org> probcons (1.12-6) unstable; urgency=low * Use proper C++ headers to fix gcc version 4.3 and higher issues (thanks for the patch to Matthias Klose) Closes: 607728

    2010-11-17 - Andreas Tille <tille@debian.org> probcons (1.12-5) unstable; urgency=low [ Charles Plessy ] * debian/control: Enhances: t-coffee. * Updated my email address. [ David Paleino ] * debian/control: - bumped Standards-Version to 3.8.0 + enabled parallel building in debian/rules - removed myself from Uploaders (will work from behind the scenes ;) ) - updated debhelper dependency on >= 6 (also debian/compat) [ Charles Plessy ] * Documented information in ‘debian/upstream-metadata.yaml’. * Removed mention of the bibliographic reference in ‘debian/control’. [ Andreas Tille ] * Added myself to uploaders * Make sure Dm-Uploader-Allowed is lower case Closes: #601509 * Standards-Version: 3.9.1 (no changes needed) * Debhelper >= 7 -> debian/rules: s/dh_clean -k/dh_prep/ * Source-Format 3.0 (quilt) * debian/README.source

    2008-01-04 - Charles Plessy <charles-debian-nospam@plessy.org> probcons (1.12-4) unstable; urgency=low [ Charles Plessy ] * debian/control: - Moved the Homepage: field out from the package's description. - Allowed upload by Debian Maintainers. - Checked the compliance with Policy 3.7.3 * debian/patches: - swiched to quilt - added a fix to build with GCC 4.3 (Closes: #455625) * debian/rules: - modify Main-RNA.cc so that it uses Defaults-RNA.h (Closes: #458926) * debian/copyright: - converted to machine-readable format. [ David Paleino ] * debian/probcons.1, debian/probcons-RNA.1, debian/pc-compare.1, debian/pc-makegnuplot.1, debian/pc-project.1 added - these have been statically built. * debian/control: - B-D updated - added myself to Uploaders * debian/rules: - manpages statically built - minor changes

    2007-05-16 - Charles Plessy <charles-debian-nospam@plessy.org> probcons (1.12-3) unstable; urgency=low * Fixed typos which caused incomplete cleaning (Closes: #424301). * Fixed double-building of binaries and manpages.

    2007-04-18 - Charles Plessy <charles-debian-nospam@plessy.org> probcons (1.12-2) unstable; urgency=low * Corrected an error in the build rules making probcons-RNA, which prevented it to benefit from the fixes on probcons. (Closes: #417482) (again!)

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