probalign_1.4-4_amd64.deb


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Description

probalign - multiple sequence alignment using partition function posterior probabilities

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: probalign
Package version: 1.4
Package release: 4
Package architecture: amd64
Package type: deb
Installed size: 176 B
Download size: 66.02 KB
Official Mirror: archive.ubuntu.com
Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% higher than the other three methods when standard deviation of length is at least 300 and 400.

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    Download

    Binary package: probalign_1.4-4_amd64.deb
    Source package: probalign

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install probalign deb package:
      # sudo apt-get install probalign

    Files

    • /usr/bin/probalign
    • /usr/share/doc/probalign/README
    • /usr/share/doc/probalign/changelog.Debian.gz
    • /usr/share/doc/probalign/copyright
    • /usr/share/man/man1/probalign.1.gz

    Changelog

    2015-12-17 - Andreas Tille <tille@debian.org> probalign (1.4-4) unstable; urgency=medium * cme fix dpkg-control * Fix Mayhem issue Closes: #716548

    2013-11-14 - Andreas Tille <tille@debian.org> probalign (1.4-3) unstable; urgency=low [ Andreas Tille ] * debian/upstream - fix typo (s/TITILE/TITLE/) - moved DOI+PMID to references - separate authors by ' and ' - added eprint * debian/control: - cme fix dpkg-control - debhelper 9 - removed quilt Build-Depends - canonical Vcs URLs * debian/copyright: DEP5 * debian/patches/hardening.patch: Propagate hardening options [ Charles Plessy ] * Add missing word in long description (Closes: #703253).

    2011-05-02 - Andreas Tille <tille@debian.org> probalign (1.4-2) unstable; urgency=low * Standards-Version: 3.9.2 (no changes needed) * Debhelper 8 (control+compat) * debian/patches/fix-gcc-4.6.patch Closes: #624979

    2011-02-02 - Andreas Tille <tille@debian.org> probalign (1.4-1) unstable; urgency=low * Initial release (Closes: #611828) (reupload with LGPL-3 license for debian/*)

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