proalign_0.603-2_amd64.deb


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Description

proalign - Probabilistic multiple alignment program

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: proalign
Package version: 0.603
Package release: 2
Package architecture: amd64
Package type: deb
Installed size: 165 B
Download size: 145.46 KB
Official Mirror: archive.ubuntu.com
ProAlign performs probabilistic sequence alignments using hidden Markov models (HMM). It includes a graphical interface (GUI) allowing to (i) perform alignments of nucleotide or amino-acid sequences, (ii) view the quality of solutions, (iii) filter the unreliable alignment regions and (iv) export alignments to other software. ProAlign uses a progressive method, such that multiple alignment is created stepwise by performing pairwise alignments in the nodes of a guide tree. Sequences are described with vectors of character probabilities, and each pairwise alignment reconstructs the ancestral (parent) sequence by computing the probabilities of different characters according to an evolutionary model.

Alternatives

Requires

    Download

    Source package: proalign

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install proalign deb package:
      # sudo apt-get install proalign

    Files

    • /usr/bin/proalign
    • /usr/share/doc/proalign/changelog.Debian.gz
    • /usr/share/doc/proalign/copyright
    • /usr/share/man/man1/proalign.1.gz
    • /usr/share/proalign/ProAlign.jar

    Changelog

    2016-01-13 - Andreas Tille <tille@debian.org> proalign (0.603-2) unstable; urgency=medium * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control

    2013-05-01 - Thorsten Alteholz <debian@alteholz.de> proalign (0.603-1) unstable; urgency=low * Initial release (Closes: #378290)

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