prime-phylo_1.0.11-2build2_amd64.deb


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Description

prime-phylo - bayesian estimation of gene trees taking the species tree into account

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name prime-phylo
Package version 1.0.11
Package release 2build2
Package architecture amd64
Package type deb
Installed size 3.25 KB
Download size 834.28 KB
Official Mirror archive.ubuntu.com
PrIME (Probabilistic Integrated Models of Evolution) is a package
supporting inference of evolutionary parameters in a Bayesian framework
using Markov chain Monte Carlo simulation. A distinguishing feature of
PrIME is that the species tree is taken into account when analyzing gene
trees.
The input data to PrIME is a multiple sequence alignment in FASTA format
and the output data contains trees in Newick format.

Alternatives

Package Version Architecture Repository
prime-phylo_1.0.11-2build2_i386.deb 1.0.11 i386 Ubuntu Universe
prime-phylo - - -

Requires

Name Value
libblas.so.3 -
libblas3 -
libboost-mpi1.58.0 -
libboost-serialization1.58.0 -
libc6 >= 2.14
libgcc1 >= 1:4.0
liblapack.so.3 -
liblapack3 -
libopenmpi1.10 -
libstdc++6 >= 5.2
libxml2 >= 2.7.4
perl -

Download

Type URL
Binary Package prime-phylo_1.0.11-2build2_amd64.deb
Source Package prime-phylo

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install prime-phylo deb package:
    # sudo apt-get install prime-phylo

Files

Path
/usr/bin/chainsaw
/usr/bin/mcmc_analysis
/usr/bin/primeDLRS
/usr/bin/primeDTLSR
/usr/bin/primeGEM
/usr/bin/primeGSRf
/usr/bin/reconcile
/usr/bin/reroot
/usr/bin/showtree
/usr/bin/tree2leafnames
/usr/bin/treesize
/usr/lib/prime-phylo/libprime-phylo-sfile.so
/usr/lib/prime-phylo/libprime-phylo.so
/usr/share/doc/prime-phylo/changelog.Debian.gz
/usr/share/doc/prime-phylo/copyright
/usr/share/lintian/overrides/prime-phylo
/usr/share/man/man1/chainsaw.1.gz
/usr/share/man/man1/mcmc_analysis.1.gz
/usr/share/man/man1/primeDLRS.1.gz
/usr/share/man/man1/primeDTLSR.1.gz
/usr/share/man/man1/primeGEM.1.gz
/usr/share/man/man1/primeGSRf.1.gz
/usr/share/man/man1/reconcile.1.gz
/usr/share/man/man1/reroot.1.gz
/usr/share/man/man1/showtree.1.gz
/usr/share/man/man1/tree2leafnames.1.gz
/usr/share/man/man1/treesize.1.gz

Changelog

2016-02-07 - Matthias Klose <doko@ubuntu.com>
prime-phylo (1.0.11-2build2) xenial; urgency=medium
* No-change rebuild for openmpi transition.
2015-08-28 - Matthias Klose <doko@ubuntu.com>
prime-phylo (1.0.11-2build1) wily; urgency=medium
* No-change rebuild using boost 1.58.
2014-10-17 - Andreas Tille <tille@debian.org>
prime-phylo (1.0.11-2) unstable; urgency=medium
* Add missing Vcs fields.
* cme fix dpkg-control
* Move debian/upstream to debian/upstream/metadata
2012-12-17 - Erik Sjolund <erik.sjolund@gmail.com>
prime-phylo (1.0.11-1) unstable; urgency=low
* Initial release (Closes: #684039)

See Also

Package Description
primer3_2.3.6-1_amd64.deb Tool to design flanking oligo nucleotides for DNA amplification
primesieve-bin_5.6.0+ds-1_amd64.deb fast prime number generator C/C++ library -- bin
primesieve-doc_5.6.0+ds-1_all.deb fast prime number generator C/C++ library -- doc
primesieve_5.6.0+ds-1_amd64.deb fast prime number generator C/C++ library
primrose_6+dfsg1-3_amd64.deb compelling tile-placement puzzle game
primus-libs_0~20150328-1_amd64.deb Shared libraries for primus
primus_0~20150328-1_amd64.deb client-side GPU offloading for NVIDIA Optimus
print-manager_15.12.3-0ubuntu1_amd64.deb printer configuration and monitoring tools
printer-driver-all-enforce_0.20140714build1_all.deb printer drivers metapackage - enforcing version
printer-driver-all_0.20140714build1_all.deb printer drivers metapackage
printer-driver-c2050_0.3b-6_amd64.deb printer driver for Lexmark 2050 Color Jetprinter
printer-driver-cjet_0.8.9-6_amd64.deb printer driver for Canon LBP laser printers
printer-driver-cups-pdf_2.6.1-21_amd64.deb printer driver for PDF writing via CUPS
printer-driver-dymo_1.4.0-5_amd64.deb printer driver for DYMO label printers
printer-driver-escpr_1.6.3-2_amd64.deb printer driver for Epson Inkjet that use ESC/P-R
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