prime-phylo_1.0.11-2build2_amd64.deb


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Description

prime-phylo - bayesian estimation of gene trees taking the species tree into account

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: prime-phylo
Package version: 1.0.11
Package release: 2build2
Package architecture: amd64
Package type: deb
Installed size: 3.25 KB
Download size: 834.28 KB
Official Mirror: archive.ubuntu.com
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees. The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Alternatives

    Download

    Source package: prime-phylo

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install prime-phylo deb package:
      # sudo apt-get install prime-phylo

    Files

    • /usr/bin/chainsaw
    • /usr/bin/mcmc_analysis
    • /usr/bin/primeDLRS
    • /usr/bin/primeDTLSR
    • /usr/bin/primeGEM
    • /usr/bin/primeGSRf
    • /usr/bin/reconcile
    • /usr/bin/reroot
    • /usr/bin/showtree
    • /usr/bin/tree2leafnames
    • /usr/bin/treesize
    • /usr/lib/prime-phylo/libprime-phylo-sfile.so
    • /usr/lib/prime-phylo/libprime-phylo.so
    • /usr/share/doc/prime-phylo/changelog.Debian.gz
    • /usr/share/doc/prime-phylo/copyright
    • /usr/share/lintian/overrides/prime-phylo
    • /usr/share/man/man1/chainsaw.1.gz
    • /usr/share/man/man1/mcmc_analysis.1.gz
    • /usr/share/man/man1/primeDLRS.1.gz
    • /usr/share/man/man1/primeDTLSR.1.gz
    • /usr/share/man/man1/primeGEM.1.gz
    • /usr/share/man/man1/primeGSRf.1.gz
    • /usr/share/man/man1/reconcile.1.gz
    • /usr/share/man/man1/reroot.1.gz
    • /usr/share/man/man1/showtree.1.gz
    • /usr/share/man/man1/tree2leafnames.1.gz
    • /usr/share/man/man1/treesize.1.gz

    Changelog

    2016-02-07 - Matthias Klose <doko@ubuntu.com> prime-phylo (1.0.11-2build2) xenial; urgency=medium * No-change rebuild for openmpi transition.

    2015-08-28 - Matthias Klose <doko@ubuntu.com> prime-phylo (1.0.11-2build1) wily; urgency=medium * No-change rebuild using boost 1.58.

    2014-10-17 - Andreas Tille <tille@debian.org> prime-phylo (1.0.11-2) unstable; urgency=medium * Add missing Vcs fields. * cme fix dpkg-control * Move debian/upstream to debian/upstream/metadata

    2012-12-17 - Erik Sjolund <erik.sjolund@gmail.com> prime-phylo (1.0.11-1) unstable; urgency=low * Initial release (Closes: #684039)

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