predictprotein_1.1.07-1_all.deb


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Description

predictprotein - suite of protein sequence analysis tools

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: predictprotein
Package version: 1.1.07
Package release: 1
Package architecture: all
Package type: deb
Installed size: 206 B
Download size: 46.74 KB
Official Mirror: archive.ubuntu.com
PredictProtein is a sequence analysis suite providing prediction of protein structure and function. PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations: * secondary structure * solvent accessibility * multiple sequence alignments * PROSITE sequence motifs * low-complexity regions * nuclear localisation signals * regions lacking regular structure (NORS) * unstructured loops * transmembrane helices * transmembrane beta barrels * coiled-coil regions * disulfide-bonds * disordered regions * B-value flexibility * protein-protein interaction sites * Gene Ontology terms

Alternatives

    Download

    Source package: predictprotein

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install predictprotein deb package:
      # sudo apt-get install predictprotein

    Files

    • /usr/bin/predictprotein
    • /usr/share/doc/predictprotein/changelog.Debian.gz
    • /usr/share/doc/predictprotein/copyright
    • /usr/share/doc/predictprotein/examples/cad23.fasta
    • /usr/share/doc/predictprotein/examples/p53.fasta
    • /usr/share/doc/predictprotein/examples/tquick.fasta
    • /usr/share/doc/predictprotein/examples/tsnap_query.fasta
    • /usr/share/man/man1/predictprotein.1.gz
    • /usr/share/man/man3/RG::PP::ACL.3pm.gz
    • /usr/share/perl5/RG/PP/ACL.pm
    • /usr/share/predictprotein/MakefilePP.mk
    • /usr/share/predictprotein/predictproteinrc.default
    • /usr/share/predictprotein/helper_apps/blast2html.pl
    • /usr/share/predictprotein/helper_apps/filter_blastp_big.pl
    • /usr/share/predictprotein/helper_apps/nors.pl
    • /usr/share/predictprotein/helper_apps/prosite_scan.pl
    • /usr/share/predictprotein/resources/HtmlHr.html
    • /usr/share/predictprotein/resources/HtmlQuote.html

    Changelog

    2015-07-03 - Andreas Tille <tille@debian.org> predictprotein (1.1.07-1) unstable; urgency=medium * New upstream version * Build-Depends: libmodule-build-perl Closes: #789640

    2014-10-02 - Andreas Tille <tille@debian.org> predictprotein (1.1.06-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * debhelper 9 * d/copyright: Move "Files: *" section on top to fit DEP5

    2014-04-02 - Andreas Tille <tille@debian.org> predictprotein (1.1.01-1) unstable; urgency=low [ Guy Yachdav ] * New upstream release: integrated somena(1) [ Andreas Tille ] * Priority: optional * Removed README.source since this it just explains usual practice * cme fix dpkg-control * correct DEP5 syntax and content of debian/copyright

    2014-03-28 - Guy Yachdav <gyachdav@rostlab.org> predictprotein (1.0.99-1) UNRELEASED; urgency=low * New upstream release: integrated reprof(1)

    2014-03-10 - Guy Yachdav <gyachdav@rostlab.org> predictprotein (1.0.98) UNRELEASED; urgency=low * New upstream release: integrated TMSEG(1)

    2014-02-26 - Guy Yachdav <gyachdav@rostlab.org> predictprotein (1.0.97~bpo70+1) UNRELEASED; urgency=low * New upstream release: mapped lc3 extensions to method.

    2014-02-11 - Guy Yachdav <gyachdav@rostlab.org> predictprotein (1.0.95-1~bpo70+1) UNRELEASED; urgency=low * New upstream release: upgraded to loctree3 (lc3)

    2013-09-30 - Laszlo Kajan <lkajan@rostlab.org> predictprotein (1.0.94-1) unstable; urgency=low * New upstream release: fixes "FTBFS: POD errors" (Closes: #724122).

    2013-06-10 - Laszlo Kajan <lkajan@rostlab.org> predictprotein (1.0.92-1~bpo70+1) unstable; urgency=low * New upstream release.

    2013-01-24 - Guy Yachdav <gyachdav@rostlab.org> predictprotein (1.0.90-1) unstable; urgency=low * New upstream release

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