poa_2.0+20060928-4_amd64.deb


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Description

poa - Partial Order Alignment for multiple sequence alignment

Distribution: Ubuntu 16.04 LTS (Xenial Xerus)
Repository: Ubuntu Universe amd64
Package name: poa
Package version: 2.0+20060928
Package release: 4
Package architecture: amd64
Package type: deb
Installed size: 144 B
Download size: 43.73 KB
Official Mirror: archive.ubuntu.com
POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.

Alternatives

Requires

    Download

    Source package: poa

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install poa deb package:
      # sudo apt-get install poa

    Files

    • /usr/bin/poa
    • /usr/share/doc/poa/NEWS.Debian.gz
    • /usr/share/doc/poa/README.Debian
    • /usr/share/doc/poa/README.gz
    • /usr/share/doc/poa/changelog.Debian.gz
    • /usr/share/doc/poa/copyright
    • /usr/share/doc/poa/examples/multidom.seq
    • /usr/share/man/man1/poa.1.gz
    • /usr/share/poa/blosum80.mat
    • /usr/share/poa/blosum80_trunc.mat
    • /usr/share/poa/make_pscores.pl

    Changelog

    2016-01-11 - Andreas Tille <tille@debian.org> poa (2.0+20060928-4) unstable; urgency=medium * moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control * DEP5 * propagate hardening options

    2012-03-08 - Andreas Tille <tille@debian.org> poa (2.0+20060928-3) unstable; urgency=low [ Charles Plessy ] * Updated my email address. [ David Paleino ] * Removed myself from Uploaders [ Charles Plessy ] * Documented information in ‘debian/upstream’. * Removed mention of the bibliographic reference in ‘debian/control’. [ Andreas Tille ] * debian/upstream: - Fixed URLs - Moved DOI/PMID to References - Removed (wrong Homepage) - Removed watch * debian/control: - Former homepage does not work any more, use Sourceforge page as homepage - Fixed VCS fields - Standards-Version: 3.9.3 (no changes needed) * debian/source/format: 3.0 (quilt) * debhelper 9 (control+compat) * debian/copyright: Rewritten to fit DEP5 and verified using cme fix dpkg-copyright * debian/rules + debhelper files: - use short dh - do not try to redirect output of test to stdout which breaks inside pbuilder * debian/test/multidom.clustal: Store result of proposed test and compare in dh_auto_test target

    2008-03-21 - Andreas Tille <tille@debian.org> poa (2.0+20060928-2) unstable; urgency=low [ Charles Plessy ] * debian/control: - Add Subversion repository URL to debian/control. - Moved the Homepage: field out from the package's description. - Enhances: t-coffee. [ Nelson A. de Oliveira ] * Added watch file. [ David Paleino ] * debian/poa.1 added - statically built * debian/control: - B-D updated - added myself to Uploaders - moved XS-Vcs-* to Vcs-* - Updated to Standards-Version 3.7.3 (no changes needed) * debian/rules: - statically build manpages (target poa.1 available) - minor changes [ Andreas Tille ] * Added myself to uploaders

    2006-09-28 - Charles Plessy <charles-debian-nospam@plessy.org> poa (2.0+20060928-1) unstable; urgency=low * New upstream version. THE PREVIOUS VERSION WAS NOT 2.0. * Updated manpage. * Added a test rule. * Removed the watch file.

    2006-08-20 - Charles Plessy <charles-debian-nospam@plessy.org> poa (2.0-1) unstable; urgency=low * Initial release Closes: #378288

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