plink_1.07-6_amd64.deb


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Description

plink - whole-genome association analysis toolset

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name plink
Package version 1.07
Package release 6
Package architecture amd64
Package type deb
Installed size 3.32 KB
Download size 1.04 MB
Official Mirror archive.ubuntu.com
plink expects as input the data from SNP (single
nucleotide polymorphism) chips of many individuals
and their phenotypical description of a disease.
It finds associations of single or pairs of DNA
variations with a phenotype and can retrieve
SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their
association with the disease phenotypes. The joint
investigation of copy number variations is supported.
A variety of statistical tests have been implemented.
Please note: The executable was renamed to plink1
because of a name clash.  Please read more about this
in /usr/share/doc/README.Debian.

Alternatives

Package Version Architecture Repository
plink_1.07-6_i386.deb 1.07 i386 Ubuntu Universe
plink - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.9
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package plink_1.07-6_amd64.deb
Source Package plink

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install plink deb package:
    # sudo apt-get install plink

Files

Path
/usr/bin/p-link
/usr/bin/plink1
/usr/lib/debian-med/bin/plink
/usr/lib/debian-med/share/man/man1/plink.1.gz
/usr/lib/plink/plink
/usr/share/doc/plink/NEWS.Debian.gz
/usr/share/doc/plink/README.Debian
/usr/share/doc/plink/README.txt
/usr/share/doc/plink/changelog.Debian.gz
/usr/share/doc/plink/copyright
/usr/share/doc/plink/examples/README
/usr/share/doc/plink/examples/expected.plink.assoc
/usr/share/doc/plink/examples/expected.plink.frq
/usr/share/doc/plink/examples/test.map
/usr/share/doc/plink/examples/test.ped
/usr/share/man/man1/p-link.1.gz
/usr/share/man/man1/plink1.1.gz

Changelog

2015-07-04 - Andreas Tille <tille@debian.org>
plink (1.07-6) unstable; urgency=medium
* Recommends: med-config (>= 2.1)
* Update NEWS.Debian and install this file
2015-01-31 - Andreas Tille <tille@debian.org>
plink (1.07-5) experimental; urgency=medium
* Also create a manpage in Debian Med name space
2015-01-22 - Dylan Aïssi <bob.dybian@gmail.com>
plink (1.07-4) experimental; urgency=low
[ Andreas Tille ]
* debian/copyright: - Add Files-Excluded to document what was removed
from original source
* debian/watch: Enable '+dfsg' suffix in Debian versions for future
upstream version upgrades
* debian/README.source: removed since redundant
* debian/get-orig-source: removed since not needed any more
[ Dylan Aïssi ]
* Moved plink executable to usr/lib/debian-med/bin/plink (and symlinked
old locations to this new location) in order to prepare cohabitation
with plink1.9 and plink2; renamed manpage accordingly
Added explicit hint in README.Debian how to proceed if you
need the original name.
* debian/control:
- Standards-Version: 3.9.6 (no changes needed)
- Fixed lintian vcs-field-not-canonical
* debian/rules:
- Activate hardening
- Repack using uscan
* debian/tests: Add autopkgtest
2012-04-23 - Andreas Tille <tille@debian.org>
plink (1.07-3) unstable; urgency=low
* debian/patches/gcc-4.7.patch: previous patch was incomplete
because the same problem occured in more files. Now really
Closes: #667325
2012-04-22 - Andreas Tille <tille@debian.org>
plink (1.07-2) unstable; urgency=low
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- Removed quilt from Build-Depends
* debian/upstream: Added citation information
* debian/source/format: 3.0 (quilt)
* debian/get-orig-source: Better chances to get a unique upstream
tarball after repackaging
* debian/copyright: 
- Rewritten to match DEP5 and verified using
cme fix dpkg-copyright
- Fix FSF address
* debian/rules: Rewritten to use short dh
* debian/patches/gcc-4.7.patch: Fix nested declaration
Thanks for the hints on debian-mentors list to
Rodolfo García Peñas <kix@kix.es>, Dmitry Nezhevenko <dion@inhex.net>,
Fernando Lemos <fernandotcl@gmail.com
Closes: 667325
* Debhelper 9 (control+compat)
2009-10-23 - Andreas Tille <tille@debian.org>
plink (1.07-1) unstable; urgency=low
* New upstream version
* Removed debian/patches/20_plink-1.06-gcc4.4.patch because it
is applied upstream
* Standards-Version: 3.8.3 (no changes needed)
* Debhelper 7
* Build-Depends: zlib1g-dev
2009-07-15 - Charles Plessy <plessy@debian.org>
plink (1.06-4) unstable; urgency=low
* debian/rules:
- Add support for DEB_BUILD_OPTIONS (Policy § 4.9.1).
- Set FORCE_DYNAMIC=1 instead of patching the Makefile
(deleted debian/patches/dynamic.patch).
* debian/control:
- Added myself to the uploaders.
- Incremented Standards-Version to reflect conformance with
Policy 3.8.2 (no changes needed).
* documented in README.source how to find help with quilt.
2009-05-19 - Andreas Tille <tille@debian.org>
plink (1.06-3) unstable; urgency=low
* Now really applying the patch to fix 64bit problems
which really
Closes: #528659
2009-05-16 - Andreas Tille <tille@debian.org>
plink (1.06-2) unstable; urgency=low
* Fallback to endian.h if all else fails on 64bit machines
(Thanks to Peter Green <plugwash@p10link.net> for the patch)
Closes: #528659

See Also

Package Description
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plopfolio.app_0.1.0-6build4_amd64.deb Personal dashboard for GNUstep
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plowshare-modules_0~git20160124.8a8190d-1_all.deb plowshare drivers for various file sharing websites
plowshare4_2.1.2-1_all.deb transitional dummy package
plowshare_2.1.2-1_all.deb download and upload files from file sharing websites
plplot-doc_5.10.0+dfsg2-0.1ubuntu2_all.deb Documentation for PLplot, a plotting library
plplot-tcl-bin_5.10.0+dfsg2-0.1ubuntu2_amd64.deb Tcl/Tk tools for PLplot, a plotting library
plplot-tcl-dev_5.10.0+dfsg2-0.1ubuntu2_amd64.deb Tcl/Tk development support for PLplot, a plotting library
plplot-tcl_5.10.0+dfsg2-0.1ubuntu2_amd64.deb Tcl/Tk support for PLplot, a plotting library
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