plink1.9_1.90~b3.31-160203-1_amd64.deb


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Description

plink1.9 - whole-genome association analysis toolset

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Universe amd64
Package name plink1.9
Package version 1.90~b3.31
Package release 160203-1
Package architecture amd64
Package type deb
Installed size 1.96 KB
Download size 796.78 KB
Official Mirror archive.ubuntu.com
plink expects as input the data from SNP (single nucleotide polymorphism)
chips of many individuals and their phenotypical description of a disease.
It finds associations of single or pairs of DNA variations with a phenotype
and can retrieve SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their association with the
disease phenotypes. The joint investigation of copy number variations is
supported. A variety of statistical tests have been implemented.
plink1.9 is a comprehensive update of plink with new algorithms and new
methods, faster and less memory consumer than the first plink.
Please note: The executable was renamed to plink1.9
because of a name clash.  Please read more about this
in /usr/share/doc/README.Debian.

Alternatives

Package Version Architecture Repository
plink1.9_1.90~b3.31-160203-1_i386.deb 1.90~b3.31 i386 Ubuntu Universe
plink1.9 - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
liblapack.so.3 -
liblapack3 -
libstdc++6 >= 4.2.1
zlib1g >= 1:1.2.6

Download

Type URL
Binary Package plink1.9_1.90~b3.31-160203-1_amd64.deb
Source Package plink1.9

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install plink1.9 deb package:
    # sudo apt-get install plink1.9

Files

Path
/usr/bin/plink1.9
/usr/lib/debian-med/bin/plink1.9
/usr/share/doc/plink1.9/README.Debian
/usr/share/doc/plink1.9/changelog.Debian.gz
/usr/share/doc/plink1.9/copyright
/usr/share/doc/plink1.9/examples/README
/usr/share/doc/plink1.9/examples/expected.plink.assoc
/usr/share/doc/plink1.9/examples/expected.plink.frq
/usr/share/doc/plink1.9/examples/toy.map
/usr/share/doc/plink1.9/examples/toy.ped
/usr/share/man/man1/plink1.9.1.gz

Changelog

2016-02-04 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3.31-160203-1) unstable; urgency=low
* New upstream release (Closes: #811910)
* debian/control:
- Standards-Version: 3.9.7 (no changes needed)
- Fixed lintian vcs-field-uses-insecure-uri
2015-12-18 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3.28-151216-1) unstable; urgency=low
* New upstream release.
2015-09-19 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3w-150903-1) unstable; urgency=low
* New upstream release
* debian/upstream/metadata: Update reference paper
* debian/control: Disable build for unsupported architectures,
thanks to Gert Wollny (Closes: #799471)
* debian/copyright: Update
2014-11-27 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3b-150117-1) unstable; urgency=low
* New upstream release, rewrite of plink (Closes: #771154)
* Import debian/* from plink 1.07-3
* Updated debian/* for plink1.9
2012-04-23 - Andreas Tille <tille@debian.org>
plink (1.07-3) unstable; urgency=low
* debian/patches/gcc-4.7.patch: previous patch was incomplete
because the same problem occured in more files. Now really
Closes: #667325
2012-04-22 - Andreas Tille <tille@debian.org>
plink (1.07-2) unstable; urgency=low
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- Removed quilt from Build-Depends
* debian/upstream: Added citation information
* debian/source/format: 3.0 (quilt)
* debian/get-orig-source: Better chances to get a unique upstream
tarball after repackaging
* debian/copyright: 
- Rewritten to match DEP5 and verified using
cme fix dpkg-copyright
- Fix FSF address
* debian/rules: Rewritten to use short dh
* debian/patches/gcc-4.7.patch: Fix nested declaration
Thanks for the hints on debian-mentors list to
Rodolfo García Peñas <kix@kix.es>, Dmitry Nezhevenko <dion@inhex.net>,
Fernando Lemos <fernandotcl@gmail.com
Closes: 667325
* Debhelper 9 (control+compat)
2009-10-23 - Andreas Tille <tille@debian.org>
plink (1.07-1) unstable; urgency=low
* New upstream version
* Removed debian/patches/20_plink-1.06-gcc4.4.patch because it
is applied upstream
* Standards-Version: 3.8.3 (no changes needed)
* Debhelper 7
* Build-Depends: zlib1g-dev
2009-07-15 - Charles Plessy <plessy@debian.org>
plink (1.06-4) unstable; urgency=low
* debian/rules:
- Add support for DEB_BUILD_OPTIONS (Policy § 4.9.1).
- Set FORCE_DYNAMIC=1 instead of patching the Makefile
(deleted debian/patches/dynamic.patch).
* debian/control:
- Added myself to the uploaders.
- Incremented Standards-Version to reflect conformance with
Policy 3.8.2 (no changes needed).
* documented in README.source how to find help with quilt.
2009-05-19 - Andreas Tille <tille@debian.org>
plink (1.06-3) unstable; urgency=low
* Now really applying the patch to fix 64bit problems
which really
Closes: #528659
2009-05-16 - Andreas Tille <tille@debian.org>
plink (1.06-2) unstable; urgency=low
* Fallback to endian.h if all else fails on 64bit machines
(Thanks to Peter Green <plugwash@p10link.net> for the patch)
Closes: #528659

See Also

Package Description
plink_1.07-6_amd64.deb whole-genome association analysis toolset
plinth_0.8.1-1_all.deb web front end for administering every aspect of a FreedomBox
plm_2.6+repack-2_all.deb Programming exerciser in Java, Python, Scala and others
ploop_1.14.1-1_amd64.deb tools to work with ploop devices and images
plopfolio.app_0.1.0-6build4_amd64.deb Personal dashboard for GNUstep
plotdrop_0.5.2-3ubuntu1_amd64.deb A minimal GNOME frontend to GNUPlot
ploticus_2.42-3_amd64.deb script driven business graphics package
plotnetcfg_0.4.1-1_amd64.deb local networking configuration diagram plotter
plotutils_2.6-3ubuntu1_amd64.deb GNU plotutils command line tools based on libplot
plowshare-modules_0~git20160124.8a8190d-1_all.deb plowshare drivers for various file sharing websites
plowshare4_2.1.2-1_all.deb transitional dummy package
plowshare_2.1.2-1_all.deb download and upload files from file sharing websites
plplot-doc_5.10.0+dfsg2-0.1ubuntu2_all.deb Documentation for PLplot, a plotting library
plplot-tcl-bin_5.10.0+dfsg2-0.1ubuntu2_amd64.deb Tcl/Tk tools for PLplot, a plotting library
plplot-tcl-dev_5.10.0+dfsg2-0.1ubuntu2_amd64.deb Tcl/Tk development support for PLplot, a plotting library
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