fsl-core_5.0.8-5_all.deb


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Description

fsl-core - metapackage for the latest version of FSL

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Multiverse i386
Package filename fsl-core_5.0.8-5_all.deb
Package name fsl-core
Package version 5.0.8
Package release 5
Package architecture all
Package type deb
Category multiverse/science
Homepage http://www.fmrib.ox.ac.uk/fsl/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 7.65 KB
Installed size 42.00 KB
FSL is a comprehensive library of image analysis and statistical tools
for fMRI, MRI and DTI brain imaging data. The suite consists of various
command line tools, as well as simple GUIs for its core analysis pipelines.
Among others, FSL offers implementations of standard GLM analysis,
white matter tractography, tissue segmentation, affine and non-linear
co-registration, and independent component analysis.
Some FSL components require additional data packages (fsl-atlases,
fsl-first-data, fsl-possum-data) that are currently available from the
NeuroDebian repository only. For more information on how to obtain these
data packages visit http://neuro.debian.net.
Users aiming to perform a complete FSL installation (including
all data components) are advised to install the 'fsl-complete'
package from NeuroDebian.

Alternatives

Package Version Architecture Repository
fsl-core_5.0.9-5~nd16.04+1_all.deb 5.0.9 all NeuroDebian Nonfree
fsl-core_5.0.9-5~nd16.04+1_all.deb 5.0.9 all NeuroDebian Nonfree
fsl-core_5.0.8-5_all.deb 5.0.8 all Ubuntu Multiverse
fsl-core - - -

Requires

Name Value
fsl-5.0-core -

Replaces

Name Value
fsl << 5.0.3

Download

Type URL
Mirror archive.ubuntu.com
Binary Package fsl-core_5.0.8-5_all.deb
Source Package fsl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install fsl-core deb package:
    # sudo apt-get install fsl-core

Files

Path
/etc/fsl/fsl.sh
/usr/share/doc/fsl-core/NEWS.Debian.gz
/usr/share/doc/fsl-core/changelog.Debian.gz
/usr/share/doc/fsl-core/copyright
/usr/share/man/man1/fsl.1.gz

Changelog

2015-08-21 - Michael Hanke <mih@debian.org>
fsl (5.0.8-5) unstable; urgency=medium
* Disable unecessary unportable debugging code that breaks on kfreebsd.
2015-08-17 - Michael Hanke <mih@debian.org>
fsl (5.0.8-4) unstable; urgency=medium
* Remove versioned dependencies on transitional packages libgd2-(no)xpm-dev
in favor of a dependency on libgd-dev (Closes: #792291). Thanks to
Mattia Rizzolo for the report.
* Add patch to force FSL to use its own modified version of the BWidget
TCL package. This prevents incompatibility issues if a system-wide
BWidget installation is found (Closes: #792758). The "fix" forces a
version requirement on BWidget 1.8 (matches embedded version,
Debian has 1.9.x as of now). This is not ideal, but a minimally intrusive
change that achieves the desired behavior. Thanks to Vincent Kersten
for the report.
* Move upstream meta data to debian/upstream/metadata.
* Drop embeded excanvas javascript library in favor of a dependency on
libjs-excanvas.
2015-03-04 - Yaroslav Halchenko <debian@onerussian.com>
fsl (5.0.8-3) UNRELEASED; urgency=medium
* fsl_app_wrapper - wrap $@ into "" to pass arguments correctly into
original utility
2015-01-16 - Michael Hanke <mih@debian.org>
fsl (5.0.8-2) experimental; urgency=medium
* Include upstream patch to prevent a crash in the FEAT component.
2014-12-21 - Michael Hanke <mih@debian.org>
fsl (5.0.8-1) unstable; urgency=medium
* New upstream release.
- New command 'fslselectvols' to select a (non-contiguous) subset of
volumes from a 4D image.
- New '-kernel boxv3' option for fslmaths.
- New '--minextent' option for cluster.
- Bugfix for header information of topup output files.
- FEAT has improved handling of non-fatal error conditions.
- Bugfix for asl_calib script.
- Bugfix for missing images in the VIENA report.
- All FSL scripts now internally set their locale to C.
- A potential race condition with multiple calls to maskdyads or slices has
been corrected.
- FDR now saves adjusted values as 1-p if the input is 1-p.
* Refresh patches and remove one resolved bashism fix.
2014-07-23 - Michael Hanke <mih@debian.org>
fsl (5.0.7-4) unstable; urgency=medium
* Fix FTBFS on kfreebsd: Disable 'stack_dump' component that is "highly
non-portable" and can be replaced, if necessary, with plain gdb.
* Fix another bashism in the *monitor script generated by bedpostx.
2014-07-20 - Michael Hanke <mih@debian.org>
fsl (5.0.7-3) unstable; urgency=medium
* Improve FSL's build configuration to not treat any non-Linux platform
as a Mac (Closes: #755356).
2014-07-17 - Michael Hanke <mih@debian.org>
fsl (5.0.7-2) unstable; urgency=low
* Add a patch to make randomise_parallel work on systems that do not have
bash as their default shell (Closes: #693373). Thanks to Philip Chase for
the patch.
* Add a patch to honor an unset FSLPARALLEL (do not submit jobs to a
cluster) even in cases where SGE_ROOT is set (Closes: #685757). Thanks to
German Gomez-Herrero for the patch.
* Sanitize PATH and LD_LIBRARY_PATH when sourcing the configuration file.
Old/duplicate FSL path entries are now removed (Closes: #695257). Thanks
to Vincent Kersten for the patch.
2014-07-11 - Michael Hanke <mih@debian.org>
fsl (5.0.7-1) unstable; urgency=medium
* New upstream release.
- new component: gps
* Remove the documentation from the source package due to a number of files
with unclear origin and license. Consequently, the -doc has been removed
as well. Upstream confirms that documentation is best consumed from the
live wiki on the project homepage.
* Move the -gpu package setup into a patch that can be applied to backports
to particular releases. The current Debian unstable doesn't have a
functional nvcc and it is i386 and amd64 only anyway.
* Cleanup and remove old and merged patches.
* Bumped Standard version to 3.9.5 -- no changes necessary.

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