varscan - variant detection in next-generation sequencing data

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Multiverse amd64
Package name varscan
Package version 2.3.9+dfsg
Package release 1
Package architecture amd64
Package type deb
Installed size 184 B
Download size 131.45 KB
Official Mirror
Variant detection in massively parallel sequencing. For one sample,
calls SNPs, indels, and consensus genotypes. For tumor-normal pairs,
further classifies each variant as Germline, Somatic, or LOH, and also
detects somatic copy number changes.


Package Version Architecture Repository
varscan_2.3.9+dfsg-1_i386.deb 2.3.9+dfsg i386 Ubuntu Multiverse
varscan - - -


Type URL
Binary Package varscan_2.3.9+dfsg-1_amd64.deb
Source Package varscan

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install varscan deb package:
    # sudo apt-get install varscan




2015-07-08 - Andreas Tille <>
varscan (2.3.9+dfsg-1) unstable; urgency=medium
* New upstream version
* Do not use patches to fix usage any more but fix it using sed in debian/rules
* cme fix dpkg-control
* Fix version mangling in d/watch
2014-09-16 - Andreas Tille <>
varscan (2.3.7+dfsg-1) unstable; urgency=medium
* New upstream version (patch was applied upstream)
2014-04-15 - Andreas Tille <>
varscan (2.3.6+dfsg-1) unstable; urgency=low
* Initial release (Closes: #744996)

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