varscan_2.3.9+dfsg-1_amd64.deb


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Description

varscan - variant detection in next-generation sequencing data

Property Value
Distribution Ubuntu 16.04 LTS (Xenial Xerus)
Repository Ubuntu Multiverse amd64
Package name varscan
Package version 2.3.9+dfsg
Package release 1
Package architecture amd64
Package type deb
Installed size 184 B
Download size 131.45 KB
Official Mirror archive.ubuntu.com
Variant detection in massively parallel sequencing. For one sample,
calls SNPs, indels, and consensus genotypes. For tumor-normal pairs,
further classifies each variant as Germline, Somatic, or LOH, and also
detects somatic copy number changes.

Alternatives

Package Version Architecture Repository
varscan_2.3.9+dfsg-1_i386.deb 2.3.9+dfsg i386 Ubuntu Multiverse
varscan - - -

Download

Type URL
Binary Package varscan_2.3.9+dfsg-1_amd64.deb
Source Package varscan

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install varscan deb package:
    # sudo apt-get install varscan

Files

Path
/usr/bin/varscan
/usr/share/doc/varscan/changelog.Debian.gz
/usr/share/doc/varscan/copyright
/usr/share/doc/varscan/faq.txt.gz
/usr/share/doc/varscan/release-notes.txt
/usr/share/doc/varscan/using-varscan.txt.gz
/usr/share/java/varscan-2.3.9.jar
/usr/share/java/varscan.jar
/usr/share/man/man1/varscan.1.gz

Changelog

2015-07-08 - Andreas Tille <tille@debian.org>
varscan (2.3.9+dfsg-1) unstable; urgency=medium
* New upstream version
* Do not use patches to fix usage any more but fix it using sed in debian/rules
* cme fix dpkg-control
* Fix version mangling in d/watch
2014-09-16 - Andreas Tille <tille@debian.org>
varscan (2.3.7+dfsg-1) unstable; urgency=medium
* New upstream version (patch was applied upstream)
2014-04-15 - Andreas Tille <tille@debian.org>
varscan (2.3.6+dfsg-1) unstable; urgency=low
* Initial release (Closes: #744996)

See Also

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vcmi_0.98+dfsg-2build1_amd64.deb Rewrite of the Heroes of Might and Magic 3 game engine
vice_2.4.dfsg+2.4.25-2_amd64.deb Versatile Commodore Emulator
video-dvdrip-doc_20030223-0.1_all.deb Documentation for dvd::rip - dummy package
videotrans_1.6.1-6_amd64.deb DVD authoring utilities
virtualbox-dkms_5.0.18-dfsg-2build1_all.deb x86 virtualization solution - kernel module sources for dkms
virtualbox-ext-pack_5.0.18-1_all.deb extra capabilities for VirtualBox, downloader
virtualbox-guest-additions-iso_5.0.18-1_all.deb guest additions iso image for VirtualBox
virtualbox-guest-dkms_5.0.18-dfsg-2build1_all.deb x86 virtualization solution - guest addition module source for dkms
virtualbox-guest-source_5.0.18-dfsg-2build1_all.deb x86 virtualization solution - guest addition module source
virtualbox-guest-utils_5.0.18-dfsg-2build1_amd64.deb x86 virtualization solution - non-X11 guest utilities
virtualbox-guest-x11_5.0.18-dfsg-2build1_amd64.deb x86 virtualization solution - X11 guest utilities
virtualbox-qt_5.0.18-dfsg-2build1_amd64.deb x86 virtualization solution - Qt based user interface
virtualbox-source_5.0.18-dfsg-2build1_all.deb x86 virtualization solution - kernel module source
virtualbox_5.0.18-dfsg-2build1_amd64.deb x86 virtualization solution - base binaries
vmtk_1.0.1-3build3_all.deb the Vascular Modeling Toolkit
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