abyss_1.3.6-1build1_i386.deb


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Description

abyss - de novo, parallel, sequence assembler for short reads

Property Value
Distribution Ubuntu 14.04 LTS (Trusty Tahr)
Repository Ubuntu Multiverse i386
Package name abyss
Package version 1.3.6
Package release 1build1
Package architecture i386
Package type deb
Installed size 3.93 KB
Download size 844.02 KB
Official Mirror archive.ubuntu.com
ABySS is a de novo, parallel, sequence assembler that is designed for
short reads. It may be used to assemble genome or transcriptome
sequence data. Parallelization is achieved using MPI, OpenMP and
pthread.
To cite your use of ABySS, please reference
ABySS: A parallel assembler for short read sequence data. Simpson JT,
Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. Genome Research,
2009-June.

Alternatives

Package Version Architecture Repository
abyss_1.3.6-1build1_amd64.deb 1.3.6 amd64 Ubuntu Multiverse
abyss - - -

Requires

Name Value
libc6 >= 2.7
libgcc1 >= 1:4.1.1
libgomp1 >= 4.2.1
libopenmpi1.6 -
libstdc++6 >= 4.4.0
make -
perl -

Download

Type URL
Binary Package abyss_1.3.6-1build1_i386.deb
Source Package abyss

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install abyss deb package:
    # sudo apt-get install abyss

Files

Path
/usr/bin/abyss-pe
/usr/lib/abyss/ABYSS
/usr/lib/abyss/ABYSS-P
/usr/lib/abyss/AdjList
/usr/lib/abyss/Consensus
/usr/lib/abyss/DAssembler
/usr/lib/abyss/DistanceEst
/usr/lib/abyss/KAligner
/usr/lib/abyss/MergeContigs
/usr/lib/abyss/MergePaths
/usr/lib/abyss/Overlap
/usr/lib/abyss/ParseAligns
/usr/lib/abyss/PathConsensus
/usr/lib/abyss/PathOverlap
/usr/lib/abyss/PopBubbles
/usr/lib/abyss/SimpleGraph
/usr/lib/abyss/abyss-align
/usr/lib/abyss/abyss-bowtie
/usr/lib/abyss/abyss-bowtie2
/usr/lib/abyss/abyss-bwa
/usr/lib/abyss/abyss-bwasw
/usr/lib/abyss/abyss-fac
/usr/lib/abyss/abyss-fatoagp
/usr/lib/abyss/abyss-filtergraph
/usr/lib/abyss/abyss-fixmate
/usr/lib/abyss/abyss-gc
/usr/lib/abyss/abyss-index
/usr/lib/abyss/abyss-junction
/usr/lib/abyss/abyss-kaligner
/usr/lib/abyss/abyss-layout
/usr/lib/abyss/abyss-map
/usr/lib/abyss/abyss-mergepairs
/usr/lib/abyss/abyss-overlap
/usr/lib/abyss/abyss-pe
/usr/lib/abyss/abyss-samtoafg
/usr/lib/abyss/abyss-scaffold
/usr/lib/abyss/abyss-todot
/usr/lib/abyss/abyss-tofastq
/usr/share/doc/abyss/README.Debian
/usr/share/doc/abyss/README.css
/usr/share/doc/abyss/README.html
/usr/share/doc/abyss/README.md.gz
/usr/share/doc/abyss/changelog.Debian.gz
/usr/share/doc/abyss/copyright
/usr/share/doc/abyss/flowchart.pdf.gz
/usr/share/man/man1/ABYSS.1.gz
/usr/share/man/man1/abyss-pe.1.gz
/usr/share/man/man1/abyss-tofastq.1.gz

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