picard-tools - Command line tools to manipulate SAM and BAM files

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name picard-tools
Package version 1.46
Package release 1build1
Package architecture all
Package type deb
Installed size 1.08 KB
Download size 374.82 KB
Official Mirror archive.ubuntu.com
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments. Picard Tools includes these
utilities to manipulate SAM and BAM files:
BamToBfq                        IlluminaBasecallsToSam
BuildBamIndex                   MarkDuplicates
CalculateHsMetrics              MeanQualityByCycle
CleanSam                        MergeBamAlignment
CollectAlignmentSummaryMetrics  MergeSamFiles
CollectGcBiasMetrics            NormalizeFasta
CollectInsertSizeMetrics        QualityScoreDistribution
CollectRnaSeqMetrics            ReplaceSamHeader
CompareSAMs                     RevertSam
CreateSequenceDictionary        SamFormatConverter
ExtractIlluminaBarcodes         SamToFastq
EstimateLibraryComplexity       SortSam
FastqToSam                      ValidateSamFile
FixMateInformation              ViewSam


Package Version Architecture Repository
picard-tools_1.46-1build1_all.deb 1.46 all Ubuntu Universe
picard-tools - - -


Name Value
java-runtime -
libsam-java >= 1.46-1build1
openjdk-6-jre -


Type URL
Binary Package picard-tools_1.46-1build1_all.deb
Source Package picard-tools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install picard-tools deb package:
    # sudo apt-get install picard-tools



See Also

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