ncbi-epcr_2.3.12-2_amd64.deb


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Description

ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged sites

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name ncbi-epcr
Package version 2.3.12
Package release 2
Package architecture amd64
Package type deb
Installed size 756 B
Download size 223.04 KB
Official Mirror archive.ubuntu.com
Electronic PCR (e-PCR) is computational procedure that is used to identify
sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential
STSs in DNA sequences by searching for subsequences that closely match the
PCR primers and have the correct order, orientation, and spacing that could
represent the PCR primers used to generate known STSs.
The new version of e-PCR implements a fuzzy matching strategy. To reduce
likelihood that a true STS will be missed due to mismatches, multiple
discontigous words may be used instead of a single exact word. Each of this
word has groups of significant positions separated by 'wildcard' positions
that are not required to match. In addition, it is also possible to allow
gaps in the primer alignments.
The main motivation for implementing reverse searching (called Reverse e-PCR)
was to make it feasible to search the human genome sequence and other large
genomes. The new version of e-PCR provides a search mode using a query
sequence against a sequence database.

Alternatives

Package Version Architecture Repository
ncbi-epcr_2.3.12-2_i386.deb 2.3.12 i386 Ubuntu Universe
ncbi-epcr - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.6

Download

Type URL
Binary Package ncbi-epcr_2.3.12-2_amd64.deb
Source Package epcr

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ncbi-epcr deb package:
    # sudo apt-get install ncbi-epcr

Files

Path
/usr/bin/e-PCR
/usr/bin/fahash
/usr/bin/famap
/usr/bin/re-PCR
/usr/share/doc/ncbi-epcr/README.Debian
/usr/share/doc/ncbi-epcr/README.html
/usr/share/doc/ncbi-epcr/README.txt.gz
/usr/share/doc/ncbi-epcr/changelog.Debian.gz
/usr/share/doc/ncbi-epcr/copyright
/usr/share/man/man1/e-PCR.1.gz
/usr/share/man/man1/fahash.1.gz
/usr/share/man/man1/famap.1.gz
/usr/share/man/man1/re-PCR.1.gz

See Also

Package Description
ncbi-rrna-data_6.1.20110713-3ubuntu2_all.deb large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin_6.1.20110713-3ubuntu2_amd64.deb NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11_6.1.20110713-3ubuntu2_amd64.deb NCBI libraries for biology applications (X-based utilities)
ncc_2.8-1_amd64.deb C source code analyzer
ncdt_2.1-3_amd64.deb Display directory tree
ncdu_1.8-1_amd64.deb ncurses disk usage viewer
ncftp_3.2.5-1_amd64.deb User-friendly and well-featured FTP client
ncmpc-lyrics_0.17-1ubuntu1_all.deb ncurses-based audio player (lyrics plugins)
ncmpc_0.17-1ubuntu1_amd64.deb ncurses-based audio player
ncmpcpp_0.5.6-2_amd64.deb ncurses-based client for the Music Player Daemon (MPD)
nco_4.0.8-1_amd64.deb command-line operators to analyze netCDF files
ncoils_2002-3_amd64.deb coiled coil secondary structure prediction
ncompress_4.2.4.4-3_amd64.deb original Lempel-Ziv compress/uncompress programs
ncpfs_2.2.6-8_amd64.deb utilities to use resources from NetWare servers
ncurses-hexedit_0.9.7-14ubuntu1_amd64.deb Edit files/disks in hex, ASCII and EBCDIC
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