mummer_3.22~dfsg-2_amd64.deb


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Description

mummer - Efficient sequence alignment of full genomes

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name mummer
Package version 3.22~dfsg
Package release 2
Package architecture amd64
Package type deb
Installed size 1.25 KB
Download size 434.88 KB
Official Mirror archive.ubuntu.com
MUMmer is a system for rapidly aligning entire genomes, whether
in complete or draft form. For example, MUMmer 3.0 can find all
20-basepair or longer exact matches between a pair of 5-megabase genomes
in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop
computer. MUMmer can also align incomplete genomes; it handles the 100s
or 1000s of contigs from a shotgun sequencing project with ease, and
will align them to another set of contigs or a genome using the NUCmer
program included with the system. If the species are too divergent for
DNA sequence alignment to detect similarity, then the PROmer program
can generate alignments based upon the six-frame translations of both
input sequences.

Alternatives

Package Version Architecture Repository
mummer_3.22~dfsg-2_i386.deb 3.22~dfsg i386 Ubuntu Universe
mummer - - -

Requires

Name Value
gawk -
libc6 >= 2.7
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.4.0
perl -

Download

Type URL
Binary Package mummer_3.22~dfsg-2_amd64.deb
Source Package mummer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mummer deb package:
    # sudo apt-get install mummer

Files

Path
/usr/bin/combineMUMs
/usr/bin/delta-filter
/usr/bin/dnadiff
/usr/bin/exact-tandems
/usr/bin/gaps
/usr/bin/mapview
/usr/bin/mgaps
/usr/bin/mummer
/usr/bin/mummer-annotate
/usr/bin/mummerplot
/usr/bin/nucmer
/usr/bin/nucmer2xfig
/usr/bin/promer
/usr/bin/repeat-match
/usr/bin/run-mummer1
/usr/bin/run-mummer3
/usr/bin/show-aligns
/usr/bin/show-coords
/usr/bin/show-diff
/usr/bin/show-snps
/usr/bin/show-tiling
/usr/lib/mummer/postnuc
/usr/lib/mummer/postpro
/usr/lib/mummer/prenuc
/usr/lib/mummer/prepro
/usr/lib/mummer/tandem-repeat.awk
/usr/share/doc/mummer/ACKNOWLEDGEMENTS
/usr/share/doc/mummer/README.Debian
/usr/share/doc/mummer/README.gz
/usr/share/doc/mummer/changelog.Debian.gz
/usr/share/doc/mummer/changelog.gz
/usr/share/doc/mummer/copyright
/usr/share/man/man1/combineMUMs.1.gz
/usr/share/man/man1/delta-filter.1.gz
/usr/share/man/man1/dnadiff.1.gz
/usr/share/man/man1/exact-tandems.1.gz
/usr/share/man/man1/gaps.1.gz
/usr/share/man/man1/mapview.1.gz
/usr/share/man/man1/mgaps.1.gz
/usr/share/man/man1/mummer-annotate.1.gz
/usr/share/man/man1/mummer.1.gz
/usr/share/man/man1/mummerplot.1.gz
/usr/share/man/man1/nucmer.1.gz
/usr/share/man/man1/nucmer2xfig.1.gz
/usr/share/man/man1/promer.1.gz
/usr/share/man/man1/repeat-match.1.gz
/usr/share/man/man1/run-mummer1.1.gz
/usr/share/man/man1/run-mummer3.1.gz
/usr/share/man/man1/show-aligns.1.gz
/usr/share/man/man1/show-coords.1.gz
/usr/share/man/man1/show-snps.1.gz
/usr/share/man/man1/show-tiling.1.gz
/usr/share/perl5/Foundation.pm

See Also

Package Description
mummy-doc_1.0.2-4_all.deb mummy class reference documentation
mummy_1.0.2-4_amd64.deb command line executable that generates C# wrappers from gccxml output
mumps-test_4.9.2.dfsg-7build1_amd64.deb Example/test binaries using MUMPS
mumudvb_1.6-1_amd64.deb multicasts all channels of a DVB transponder on a network
munge_0.5.10-1_amd64.deb authentication service to create and validate credentials
munin-java-plugins_1.4.6-3ubuntu3_all.deb network-wide graphing framework (java plugins for node)
munin-libvirt-plugins_0.0.6-1_all.deb Munin plugins using libvirt
munin-plugins-extra_1.4.6-3ubuntu3_all.deb network-wide graphing framework (user contributed plugins for node)
mupdf-tools_0.9-2ubuntu1_amd64.deb commmand line tools for the MuPDF viewer
mupdf_0.9-2ubuntu1_amd64.deb lightweight PDF viewer
mupen64plus-audio-all_1.99.4+4_all.deb plugin-based Nintendo 64 emulator, audio plugins
mupen64plus-audio-sdl_1.99.4-4_amd64.deb sdl audio output plugin for mupen64plus
mupen64plus-input-all_1.99.4+4_all.deb plugin-based Nintendo 64 emulator, input plugins
mupen64plus-input-sdl_1.99.4-4_amd64.deb sdl input device plugin for mupen64plus
mupen64plus-rsp-all_1.99.4+4_all.deb plugin-based Nintendo 64 emulator, rsp plugins
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