mlv-smile_1.47-2_amd64.deb


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Description

mlv-smile - Find statistically significant patterns in sequences

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name mlv-smile
Package version 1.47
Package release 2
Package architecture amd64
Package type deb
Installed size 465 B
Download size 247.89 KB
Official Mirror archive.ubuntu.com
Smile determines sequence motifs on the basis of a set of DNA, RNA or
protein sequences. The work was originally described in the Journal of
Computational Biology (2000) 7:345-362 and has since been developed further.
* No hard limit on the number of combinations of motifs to describe
subsets of sequences.
* The sequence alphabet may be specified.
* The use of wildcards is supported.
* Better determination of significance of motifs by simulation.
* Introduction of a set of sequences with negative controls
that should not match automatically determined motifs.

Alternatives

Package Version Architecture Repository
mlv-smile_1.47-2_i386.deb 1.47 i386 Ubuntu Universe
mlv-smile - - -

Requires

Name Value
libc6 >= 2.4
perl -

Download

Type URL
Binary Package mlv-smile_1.47-2_amd64.deb
Source Package mlv-smile

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mlv-smile deb package:
    # sudo apt-get install mlv-smile

Files

Path
/usr/bin/mlv-smile
/usr/lib/mlv-smile/bin/e-smile_against
/usr/lib/mlv-smile/bin/e-smile_shuffling
/usr/lib/mlv-smile/bin/x-smile
/usr/lib/mlv-smile/bin/x-smile_delta
/usr/share/doc/mlv-smile/1box_deg.gz
/usr/share/doc/mlv-smile/NEW
/usr/share/doc/mlv-smile/README.Debian
/usr/share/doc/mlv-smile/READ_ME.gz
/usr/share/doc/mlv-smile/alphabet
/usr/share/doc/mlv-smile/alphabet_deg
/usr/share/doc/mlv-smile/changelog.Debian.gz
/usr/share/doc/mlv-smile/copyright
/usr/share/doc/mlv-smile/example.gz
/usr/share/doc/mlv-smile/example.shuffle.gz
/usr/share/doc/mlv-smile/example2.shuffle.gz
/usr/share/doc/mlv-smile/fasta.gz
/usr/share/doc/mlv-smile/fastawrong
/usr/share/doc/mlv-smile/param_1box
/usr/share/doc/mlv-smile/param_against
/usr/share/doc/mlv-smile/param_delta
/usr/share/doc/mlv-smile/param_example
/usr/share/doc/mlv-smile/DocFrancais/LISEZ_MOI.gz
/usr/share/doc/mlv-smile/DocFrancais/NOUVEAU
/usr/share/doc/mlv-smile/DocFrancais/param_1bloc
/usr/share/doc/mlv-smile/DocFrancais/param_contre
/usr/share/doc/mlv-smile/DocFrancais/param_delta
/usr/share/doc/mlv-smile/DocFrancais/param_exemple
/usr/share/man/man1/mlv-smile.1.gz

See Also

Package Description
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mmake_2.3-5.1_all.deb Makefile generator for Java programs
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mmass_4.0.0-1_all.deb Mass spectrometry tool for proteomics
mmm-mode_0.4.8-6_all.deb Multiple Major Mode for Emacs
mmorph_2.3.4.2-12.1_amd64.deb A two-level morphology tool for natural language processing
mmpong-caca_0.9.1-2_amd64.deb massively multiplayer pong game client (caca version)
mmpong-gl-data_0.9.1-2_all.deb massively multiplayer pong game client data (OpenGL version)
mmpong-gl_0.9.1-2_amd64.deb massively multiplayer pong game client (OpenGL version)
mmpongd_0.9.1-2_amd64.deb massively multiplayer pong game server
mmv_1.01b-15_amd64.deb Move/Copy/Append/Link multiple files
mnemo2_2.2.3+debian0-1_all.deb notes/memos component for Horde Framework
mnemosyne-blog_0.12-2_all.deb Maildir-to-blog compiler with XML templating and Python extensions
mnemosyne_1.2.2-2_all.deb spaced repetition flash-card program
moap_0.2.7-1_all.deb Swiss army knife for project maintainers and developers
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