mipe_1.1-3_all.deb


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Description

mipe - Tools to store PCR-derived data

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name mipe
Package version 1.1
Package release 3
Package architecture all
Package type deb
Installed size 312 B
Download size 61.63 KB
Official Mirror archive.ubuntu.com
MIPE provides a standard format to exchange and/or storage of all
information associated with PCR experiments using a flat text file. This will:
* allow for exchange of PCR data between researchers/laboratories
* enable traceability of the data
* prevent problems when submitting data to dbSTS or dbSNP
* enable the writing of standard scripts to extract data (e.g. a
list of PCR primers, SNP positions or haplotypes for different animals)
Although this tool can be used for data storage, it's primary focus
should be data exchange. For larger repositories, relational databases
are more appropriate for storage of these data. The MIPE format could
then be used as a standard format to import into and/or export from
these databases.
MIPE was published in: Aerts J & Veenendaal T. MIPE - a XML-format to
facilitate the storage and exchange of PCR-related data. Online Journal of
Bioinformatics 6(2): 114-120 (2005).

Alternatives

Package Version Architecture Repository
mipe_1.1-3_all.deb 1.1 all Ubuntu Universe
mipe - - -

Requires

Name Value
libxml-perl -
libxml-twig-perl -

Download

Type URL
Binary Package mipe_1.1-3_all.deb
Source Package mipe

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mipe deb package:
    # sudo apt-get install mipe

Files

Path
/usr/bin/csv2mipe
/usr/bin/genotype2mipe
/usr/bin/mipe06to07
/usr/bin/mipe08to09
/usr/bin/mipe0_9to1_0
/usr/bin/mipe2dbSTS
/usr/bin/mipe2fas
/usr/bin/mipe2genotypes
/usr/bin/mipe2html
/usr/bin/mipe2pcroverview
/usr/bin/mipe2pcrprimers
/usr/bin/mipe2putativesbeprimers
/usr/bin/mipe2sbeprimers
/usr/bin/mipe2snps
/usr/bin/mipeCheckSanity
/usr/bin/removePcrFromMipe
/usr/bin/removeSbeFromMipe
/usr/bin/removeSnpFromMipe
/usr/bin/sbe2mipe
/usr/bin/snp2mipe
/usr/bin/snpPosOnDesign
/usr/bin/snpPosOnSource
/usr/share/doc/mipe/README
/usr/share/doc/mipe/changelog.Debian.gz
/usr/share/doc/mipe/copyright
/usr/share/man/man1/csv2mipe.1.gz
/usr/share/man/man1/genotype2mipe.1.gz
/usr/share/man/man1/mipe06to07.1.gz
/usr/share/man/man1/mipe08to09.1.gz
/usr/share/man/man1/mipe0_9to1_0.1.gz
/usr/share/man/man1/mipe2dbSTS.1.gz
/usr/share/man/man1/mipe2fas.1.gz
/usr/share/man/man1/mipe2genotypes.1.gz
/usr/share/man/man1/mipe2html.1.gz
/usr/share/man/man1/mipe2pcroverview.1.gz
/usr/share/man/man1/mipe2pcrprimers.1.gz
/usr/share/man/man1/mipe2putativesbeprimers.1.gz
/usr/share/man/man1/mipe2sbeprimers.1.gz
/usr/share/man/man1/mipe2snps.1.gz
/usr/share/man/man1/mipeCheckSanity.1.gz
/usr/share/man/man1/removePcrFromMipe.1.gz
/usr/share/man/man1/removeSbeFromMipe.1.gz
/usr/share/man/man1/removeSnpFromMipe.1.gz
/usr/share/man/man1/sbe2mipe.1.gz
/usr/share/man/man1/snp2mipe.1.gz
/usr/share/man/man1/snpPosOnDesign.1.gz
/usr/share/man/man1/snpPosOnSource.1.gz
/usr/share/mipe/mipe.dtd
/usr/share/mipe/mipe.xsd

See Also

Package Description
mira-assembler_3.4.0.1-1_amd64.deb Whole Genome Shotgun and EST Sequence Assembler
mira-doc_3.4.0.1-1_all.deb documentation for the mira assembler
mira-examples_3.4.0.1-1_all.deb files to experiment with the mira assembler
mirage_0.9.5.1-1.1_amd64.deb fast and simple GTK+ image viewer
miredo-server_1.2.3-1ubuntu1_amd64.deb Teredo IPv6 tunneling server
miredo_1.2.3-1ubuntu1_amd64.deb Teredo IPv6 tunneling through NATs
mirmon_2.4-2_all.deb monitor the state of mirrors
miro-data_4.0.4-1_all.deb GTK+ based RSS video aggregator data files
miro_4.0.4-1_amd64.deb GTK+ based RSS video aggregator
mirror_2.9-59_all.deb keeps FTP archives up-to-date
mirrorkit_0.1.1-0ubuntu4_all.deb Python frontend to debmirror
mirrormagic-data_2.0.2.0deb1-9_all.deb Data files for mirrormagic
mirrormagic_2.0.2.0deb1-9_amd64.deb Shoot around obstacles to collect energy using your beam
missidentify_1.0-6_amd64.deb a program to find win32 applications
missingh-doc_6_all.deb transitional dummy package
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