maq_0.7.1-4_amd64.deb


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Description

maq - maps short fixed-length polymorphic DNA sequence reads to reference sequences

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name maq
Package version 0.7.1
Package release 4
Package architecture amd64
Package type deb
Installed size 608 B
Download size 301.83 KB
Official Mirror archive.ubuntu.com
Maq (short for Mapping and Assembly with Quality) builds mapping assemblies
from short reads generated by the next-generation sequencing machines. It was
particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a
preliminary functionality to handle ABI SOLiD data. Maq is previously known as
mapass2.
Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Alternatives

Package Version Architecture Repository
maq_0.7.1-4_i386.deb 0.7.1 i386 Ubuntu Universe
maq - - -

Requires

Name Value
libc6 >= 2.4
libstdc++6 >= 4.1.1
zlib1g >= 1:1.2.3.3.dfsg

Download

Type URL
Binary Package maq_0.7.1-4_amd64.deb
Source Package maq

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install maq deb package:
    # sudo apt-get install maq

Files

Path
/usr/bin/farm-run.pl
/usr/bin/maq
/usr/bin/maq.pl
/usr/bin/maq_eval.pl
/usr/bin/maq_plot.pl
/usr/share/doc-base/maq
/usr/share/doc/maq/AUTHORS
/usr/share/doc/maq/NEWS.gz
/usr/share/doc/maq/README
/usr/share/doc/maq/changelog.Debian.gz
/usr/share/doc/maq/copyright
/usr/share/doc/maq/maq.pdf
/usr/share/doc/maq/reference
/usr/share/lintian/overrides/maq
/usr/share/man/man1/maq.1.gz
/usr/share/maq/asub
/usr/share/maq/fq_all2std.pl
/usr/share/maq/maq_post.pl
/usr/share/maq/maq_sanger.pl
/usr/share/maq/paf_utils.pl
/usr/share/maq/solid2fastq.pl

See Also

Package Description
maqview_0.2.5-1_amd64.deb graphical read alignment viewer for short gene sequences
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marble-touch_4.8.2-0ubuntu2_amd64.deb globe and map widget for tablets
maria-doc_1.3.5-4_all.deb documentation of Maria
maria_1.3.5-4_amd64.deb reachability analyzer for Algebraic System Nets
markdown_1.0.1-7_all.deb Text-to-HTML conversion tool
mason_1.0.0-12.2_all.deb Interactively creates a Linux packet filtering firewall
masqmail_0.2.30-1_amd64.deb mail transport agent for intermittently connected hosts
massif-visualizer_0.3-0ubuntu1_amd64.deb Tool for visualizing memory usage recorded by Valgrind Massif
massxpert-data_3.2.0-2_all.deb linear polymer mass spectrometry software - arch-indep data
massxpert-doc_3.2.0-2_all.deb Linear polymer mass spectrometry software - manual
massxpert_3.2.0-2_amd64.deb linear polymer mass spectrometry software
matanza_0.13+ds1-1_amd64.deb Space ascii war game
matchbox-common_0.9.1-3_all.deb common files for Matchbox Project applications
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