mafft_6.850-1_amd64.deb


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Description

mafft - Multiple alignment program for amino acid or nucleotide sequences

Property Value
Distribution Ubuntu 12.04 LTS (Precise Pangolin)
Repository Ubuntu Universe amd64
Package name mafft
Package version 6.850
Package release 1
Package architecture amd64
Package type deb
Installed size 7.70 KB
Download size 3.28 MB
Official Mirror archive.ubuntu.com
MAFFT is a multiple sequence alignment program which offers three
accuracy-oriented methods:
* L-INS-i (probably most accurate; recommended for <200 sequences;
iterative refinement method incorporating local pairwise alignment
information),
* G-INS-i (suitable for sequences of similar lengths; recommended for
<200 sequences; iterative refinement method incorporating global
pairwise alignment information),
* E-INS-i (suitable for sequences containing large unalignable regions;
recommended for <200 sequences),
and five speed-oriented methods:
* FFT-NS-i (iterative refinement method; two cycles only),
* FFT-NS-i (iterative refinement method; max. 1000 iterations),
* FFT-NS-2 (fast; progressive method),
* FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
method with a rough guide tree),
* NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
method with the PartTree algorithm).

Alternatives

Package Version Architecture Repository
mafft_6.850-1_i386.deb 6.850 i386 Ubuntu Universe
mafft - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package mafft_6.850-1_amd64.deb
Source Package mafft

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mafft deb package:
    # sudo apt-get install mafft

Files

Path
/usr/bin/mafft
/usr/bin/mafft-homologs
/usr/lib/mafft/bin/einsi
/usr/lib/mafft/bin/fftns
/usr/lib/mafft/bin/fftnsi
/usr/lib/mafft/bin/ginsi
/usr/lib/mafft/bin/linsi
/usr/lib/mafft/bin/mafft
/usr/lib/mafft/bin/mafft-distance
/usr/lib/mafft/bin/mafft-einsi
/usr/lib/mafft/bin/mafft-fftns
/usr/lib/mafft/bin/mafft-fftnsi
/usr/lib/mafft/bin/mafft-ginsi
/usr/lib/mafft/bin/mafft-homologs.rb
/usr/lib/mafft/bin/mafft-linsi
/usr/lib/mafft/bin/mafft-nwns
/usr/lib/mafft/bin/mafft-nwnsi
/usr/lib/mafft/bin/mafft-profile
/usr/lib/mafft/bin/mafft-qinsi
/usr/lib/mafft/bin/mafft-xinsi
/usr/lib/mafft/bin/nwns
/usr/lib/mafft/bin/nwnsi
/usr/lib/mafft/lib/mafft/contrafoldwrap
/usr/lib/mafft/lib/mafft/countlen
/usr/lib/mafft/lib/mafft/disttbfast
/usr/lib/mafft/lib/mafft/dndblast
/usr/lib/mafft/lib/mafft/dndfast7
/usr/lib/mafft/lib/mafft/dndpre
/usr/lib/mafft/lib/mafft/dndpre2
/usr/lib/mafft/lib/mafft/dvtditr
/usr/lib/mafft/lib/mafft/f2cl
/usr/lib/mafft/lib/mafft/getlag
/usr/lib/mafft/lib/mafft/mafft-distance
/usr/lib/mafft/lib/mafft/mafft-profile
/usr/lib/mafft/lib/mafft/mccaskillwrap
/usr/lib/mafft/lib/mafft/multi2hat3s
/usr/lib/mafft/lib/mafft/pair2hat3s
/usr/lib/mafft/lib/mafft/pairash
/usr/lib/mafft/lib/mafft/pairlocalalign
/usr/lib/mafft/lib/mafft/regtable2seq
/usr/lib/mafft/lib/mafft/replaceu
/usr/lib/mafft/lib/mafft/restoreu
/usr/lib/mafft/lib/mafft/rnatest
/usr/lib/mafft/lib/mafft/score
/usr/lib/mafft/lib/mafft/seq2regtable
/usr/lib/mafft/lib/mafft/setcore
/usr/lib/mafft/lib/mafft/sextet5
/usr/lib/mafft/lib/mafft/splittbfast
/usr/lib/mafft/lib/mafft/tbfast
/usr/share/doc/mafft/README.Debian
/usr/share/doc/mafft/changelog.Debian.gz
/usr/share/doc/mafft/copyright
/usr/share/doc/mafft/test/sample.dpparttree.gz
/usr/share/doc/mafft/test/sample.fftns2.gz
/usr/share/doc/mafft/test/sample.fftnsi.gz
/usr/share/doc/mafft/test/sample.gins1.gz
/usr/share/doc/mafft/test/sample.ginsi.gz
/usr/share/doc/mafft/test/sample.gz
/usr/share/doc/mafft/test/sample.lins1.gz
/usr/share/doc/mafft/test/sample.linsi.gz
/usr/share/doc/mafft/test/sample.parttree.gz
/usr/share/doc/mafft/test/samplerna
/usr/share/doc/mafft/test/samplerna.xinsi-globalpair
/usr/share/doc/mafft/test/samplerna.xinsi-scarnapair
/usr/share/man/man1/einsi.1.gz
/usr/share/man/man1/fftns.1.gz
/usr/share/man/man1/fftnsi.1.gz
/usr/share/man/man1/ginsi.1.gz
/usr/share/man/man1/linsi.1.gz
/usr/share/man/man1/mafft-einsi.1.gz
/usr/share/man/man1/mafft-fftns.1.gz
/usr/share/man/man1/mafft-fftnsi.1.gz
/usr/share/man/man1/mafft-ginsi.1.gz
/usr/share/man/man1/mafft-homologs.1.gz
/usr/share/man/man1/mafft-linsi.1.gz
/usr/share/man/man1/mafft-profile.1.gz
/usr/share/man/man1/mafft.1.gz

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